Stenotrophomonas indicatrix: DAIF1_37540
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Entry
DAIF1_37540 CDS
T07128
Symbol
groL
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
sinc
Stenotrophomonas indicatrix
Pathway
sinc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAIF1_37540 (groL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinc03019
]
DAIF1_37540 (groL)
03110 Chaperones and folding catalysts [BR:
sinc03110
]
DAIF1_37540 (groL)
03029 Mitochondrial biogenesis [BR:
sinc03029
]
DAIF1_37540 (groL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sinc04147
]
DAIF1_37540 (groL)
Enzymes [BR:
sinc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
DAIF1_37540 (groL)
Messenger RNA biogenesis [BR:
sinc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
DAIF1_37540 (groL)
Chaperones and folding catalysts [BR:
sinc03110
]
Heat shock proteins
HSP60 / Chaperonin
DAIF1_37540 (groL)
Mitochondrial biogenesis [BR:
sinc03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
DAIF1_37540 (groL)
Exosome [BR:
sinc04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
DAIF1_37540 (groL)
Exosomal proteins of other body fluids (saliva and urine)
DAIF1_37540 (groL)
Exosomal proteins of breast cancer cells
DAIF1_37540 (groL)
Exosomal proteins of colorectal cancer cells
DAIF1_37540 (groL)
Exosomal proteins of bladder cancer cells
DAIF1_37540 (groL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
QBR46165
LinkDB
All DBs
Position
complement(4137015..4138664)
Genome browser
AA seq
549 aa
AA seq
DB search
MAAKDIRFGEDARSRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEI
ELADKFENMGAQMVKEVASRTNDDAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGI
DKAVVAAVAELKNISKPTADDKAIAQVGTISANSDESIGQIIANAMKEVGKEGVITVEEG
SGLDNELDVVKGMQFDRGYLSPYFINNQQSQTADLDDPYILLHDKKISNVRDLLPVLEGV
AKAGKPLLIVAEEVEGEALATLVVNTIRGIVKVVAVKAPGFGDRRKAMLEDMAVLTGGTV
ISEEVGLSLEKATIKDLGRAKKVQVSKENTTIIDGVGDKAAVDSRVAQIKTQIEDTSSDY
DREKLQERVAKLAGGVAVIKVGASTEIEMKEKKDRVDDALHATRAAVEEGVVPGGGVALV
RAVSALAGLKGANEDQNHGIQIALRAMEAPLREIVANAGEEPSVIVNKVKEGTGSFGYNA
ATGEFGDMLQFGILDPTKVTRSALQNAASIAGLMITTEAMVADAPKKDEPAMGGAGGMGG
MGGMGGMDF
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaaggatattcgtttcggtgaagacgcccgttcgcgcatggtgcgcggcgtc
aacgttctcgccaatgccgtcaaggccaccctgggcccgaagggccgcaacgtcgtgctc
gagaagagcttcggcgccccgaccatcaccaaggacggcgtgtccgtcgccaaggaaatc
gaactggctgacaagttcgagaacatgggcgcgcagatggtgaaggaagtcgcctcgcgt
accaacgacgacgccggcgacggcaccaccaccgccaccgtgctggcccaggccctgatc
cgcgaaggcgccaaggccgttgctgccggcatgaacccgatggacctcaagcgcggtatc
gacaaggccgtcgtggctgccgtcgccgagctgaagaacatctccaagccgaccgctgac
gacaaggccattgcccaggtcggcacgatctcggccaactcggacgagtcgatcggccag
atcatcgccaacgcgatgaaggaagtcggcaaggaaggcgtgatcaccgttgaagaaggc
tcgggcctggacaacgagctggacgtggtcaagggcatgcagttcgaccgcggctacctg
tccccgtacttcatcaacaaccagcagtcgcagaccgctgacctggatgacccgtacatc
ctgctgcacgacaagaagatctccaacgtccgtgacctgctgccggtgctggaaggcgtc
gccaaggctggcaagccgctgctgatcgttgccgaggaagtcgaaggcgaagcgctggcg
accctggtggtcaacaccatccgcggcatcgtcaaggtcgtggccgtcaaggctccgggc
ttcggcgaccgtcgcaaggcgatgctggaagacatggccgtgctgaccggcggcaccgtg
atctccgaggaagtcggcctgtcgctggaaaaggccaccatcaaggacctgggccgcgcc
aagaaggtgcaggtctccaaggaaaacaccaccatcatcgatggcgtgggtgacaaggct
gcggtcgattcgcgcgttgcgcagatcaagacccagatcgaagacacctcctcggactac
gaccgcgagaagctgcaggagcgcgtggccaagctggccggtggcgttgcagtgatcaag
gtcggcgcgtcgaccgaaatcgaaatgaaggaaaagaaggatcgcgtcgacgacgccctg
cacgcgacccgtgcagccgttgaagaaggcgtggtcccgggcggcggcgttgccctggtc
cgtgcggtctccgcactggctggcctgaagggtgccaacgaagaccagaaccacggcatc
cagatcgccctgcgcgcgatggaagccccgctgcgcgaaatcgttgccaacgccggtgaa
gagccgtcggtcatcgtcaacaaggtcaaggaaggcaccggcagcttcggctacaacgcc
gctaccggcgagttcggcgacatgctgcagttcggcatcctggacccgaccaaggtgacc
cgttcggcgctgcagaacgcagcctcgatcgctggcctgatgatcaccaccgaagccatg
gttgccgacgctccgaagaaggacgagccggccatgggtggcgctggtggcatgggcggc
atgggtggcatgggcggcatggacttctaa
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