Stenotrophomonas indicatrix: DAIF1_37980
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Entry
DAIF1_37980 CDS
T07128
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sinc
Stenotrophomonas indicatrix
Pathway
sinc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAIF1_37980 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinc03019
]
DAIF1_37980 (rhlB)
Enzymes [BR:
sinc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DAIF1_37980 (rhlB)
Messenger RNA biogenesis [BR:
sinc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DAIF1_37980 (rhlB)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RhlB
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
QBR46209
LinkDB
All DBs
Position
complement(4181294..4183024)
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AA seq
576 aa
AA seq
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MSDKPLTDLTFSSFDLHPALQAGLEGAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKT
LAFLVAVVNRLLTRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLRFALVYG
GVDYDKQREILQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERSTRQTLLFSATLSHRVLELAYEHMNEPQKLVVEAETITAARVRQRIYFPA
DEEKIPLLLGLLSRSEGARTMVFVNTKVFVERVARSLERSGYRVGVLSGDVPQKKRESLL
NRFQKGQLEILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMGLPDIEAYIEQKIPVEAVTSEILTSLPRPERAAPAPGEEGDENESVGQIFREA
REARAAEEERRGGGRSGGRSGSGAGAGRGGRDGERSGERRPRGPRKPRVEGEQVAAAAVE
GAVTAEAAAVQAPRPPRPEAAPEGAVDGERKPRKRRRRRHGRPVEGAEGVASNAGNGASP
VTPVQVVAKPVRTSADAGDSFLTRIGRKIRRMLSGN
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaccgctgaccgatttgactttttcctcctttgatctgcatccggccctg
caggccggtcttgaaggagccggattcacccgctgcacgcccatccaggcgctgaccctg
ccggtcgcgctgcccggtggcgacgtcgccggccaggcccagaccggcaccggcaagacg
ctggccttcctggtcgctgtcgtgaaccgcctgctgacccgcccggcactggccgatcgc
aagccggaagacccgcgcgcgctgatcctggcccccacccgcgaactggccatccagatc
cacaaggatgcggtcaagttcggttcggacctgggtttgcgtttcgcgctggtctacggc
ggcgttgactacgacaagcagcgcgagatcctgcagcagggcgtggacgtgatcatcgcc
acccccggccgcctgatcgactacgtcaagcagcacaaggtggtgtcgctgcacgcctgc
gagatctgcgtgctggacgaagccgaccgcatgttcgacctgggcttcatcaaggacatc
cgcttcctgctgcgccgcatgcccgagcgctccacccggcagaccctgctgttcagcgcc
accctgagccaccgcgtgctcgagctggcctatgagcacatgaacgagccgcagaagttg
gtggtcgaagccgagaccatcaccgccgcgcgcgtgcgccagcgcatctacttcccggcc
gacgaagagaagatcccgttgctgctgggcctgctgtcgcgcagcgaaggcgcgcgcacc
atggtcttcgtcaacaccaaggtgttcgtcgagcgcgtggcccgttcgctggagcgttcc
ggctaccgcgtcggcgtgctgtccggcgacgtgccgcagaagaagcgcgagagcctgctc
aaccgcttccagaagggccagctggaaatcctggtggccaccgatgtggccgcccgcggc
ctgcatatcgacggcatcaagtacgtctacaactacgacctgccgttcgacgccgaagac
tacgtgcaccgcatcggccgtaccgcccgcctgggcgaggaaggcgatgccatcagcttc
gcctgcgagcgctatgcgatgggcctgccggatatcgaggcctacatcgaacagaagatc
ccggtcgaagcggtcaccagcgagatcctgacgtcgctgccgcgccctgagcgtgccgcc
ccggcaccgggcgaggaaggcgacgagaacgaaagcgtcggccagatcttccgcgaagca
cgcgaagcgcgcgccgccgaggaagagcgtcgtggcggcggccgtagtggcggtcgttcc
ggcagtggtgctggcgctgggcgtggtggccgcgatggcgagcgcagcggcgaacgccgt
ccgcgtggcccgcgcaagccgcgtgtggaaggtgagcaggttgctgctgccgcagtcgag
ggtgcagtgacggctgaagctgctgccgtgcaggctccgcgtccgccgcgccctgaagct
gcgccggaaggtgcggtggacggcgagcgcaagccgcgcaagcgtcgtcgtcgtcgccac
ggccgtccggtcgagggcgccgaaggtgtggcaagcaacgccggcaacggcgccagcccg
gttaccccggtgcaggtggtggccaagccggtgcgtaccagcgccgatgccggcgactcg
ttcctgacccgtatcggccgcaagatccgccggatgctgtccggcaattaa
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