Stenotrophomonas indicatrix: DAIF1_40780
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Entry
DAIF1_40780 CDS
T07128
Symbol
polA_2
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sinc
Stenotrophomonas indicatrix
Pathway
sinc03030
DNA replication
sinc03410
Base excision repair
sinc03420
Nucleotide excision repair
sinc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sinc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DAIF1_40780 (polA_2)
03410 Base excision repair
DAIF1_40780 (polA_2)
03420 Nucleotide excision repair
DAIF1_40780 (polA_2)
03440 Homologous recombination
DAIF1_40780 (polA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sinc03032
]
DAIF1_40780 (polA_2)
03400 DNA repair and recombination proteins [BR:
sinc03400
]
DAIF1_40780 (polA_2)
Enzymes [BR:
sinc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DAIF1_40780 (polA_2)
DNA replication proteins [BR:
sinc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DAIF1_40780 (polA_2)
DNA repair and recombination proteins [BR:
sinc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
DAIF1_40780 (polA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DAIF1_40780 (polA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
QBR46483
LinkDB
All DBs
Position
complement(4492637..4495411)
Genome browser
AA seq
924 aa
AA seq
DB search
MSRLVLIDGSSYLYRAFHALPPLSNAQGEPTGALFGVVNMLRSTLKERPAYVAFVVDAPG
KTFRDDLYDQYKANRPPMPDELRSQVEPMCRIVEALGISILRIDGVEADDVIGTLALQGV
AQDLKVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAAVMDKFGVRADQIVDLLALMGD
TVDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPTMKGKIGENLRAALERLPLNKELVTI
RTDVALDASPTTLALRDPDVPTLGELYLRYGFTQALKELGGPVPAPAVANDATPSLRGTA
AGFARGSAEAPPVGELDPALSAPGEYETVLTTEQLQAWVARVQQADLISFDTETDALDAM
RARLVGISVAVEPGKAAYIPVGHDYPGAPAQLPLAQVLDALRPVLQDPAKKKLGQHGKYD
LHVLRRHGVDVQGYHDDTMLESFVLNSTATRHDMDSLALRYLGYNTIKFEDVAGKGAKQI
SFSQVGIDEAGRYAAEDADITLRLHHALQPQLLAEPTLDSVYRSIEMPLVPVLASIEANG
VRIDTDELRRQSQDLSSRMLAAQQKATELAGRSFNLDSPKQLQAVLFDELKLPAVVKTPK
GQPSTNEEALEAIAEQHELPRVILEYRGLAKLRSTYTDKLPEMVNSETGRVHTSYHQSGA
ATGRLSSSDPNLQNIPIRTEDGRRIRRAFIAPEGFQLLAADYSQIELRIMAHLSGDPGLV
RAFEQGADVHRATAAEVFGRTLEEVTSNERRAAKAINFGLMYGMSAFGLARNLGIDRGQA
QDYVALYFSRYPGVRDFMERMREQAREQGYVETLFGRRLYLNDIHARNQGLRAGAERAAI
NAPMQGTAADIIKRAMVDVDKWLRDSGAPARMILQVHDELVFEAEAGFIEELRSNVVQRM
SQAAQLRVPLVVDTGTGSNWDEAH
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atgagcagattagtcctgatcgacgggtccagttacctgtaccgcgcgttccacgcgctg
ccgcccctgtccaatgcacagggtgagcccaccggcgcgctgttcggcgtggtcaacatg
ctgcgctcgacgctgaaggagcgcccggcctacgtcgccttcgtcgtcgatgcccccggc
aagaccttccgcgatgacctgtacgaccagtacaaggccaaccgcccgccgatgcccgat
gaactgcgcagccaggtcgagccgatgtgccgcatcgtcgaagcgctgggcatcagcatc
ctgcgcatcgacggcgtggaggccgatgatgtgatcggcaccctggccctgcagggcgtg
gcacaggacctgaaggtcaccatctcgaccggcgacaaggatttcgcgcagctggtccgg
ccgggcatcgaactggtcaacaccatgaccggcagccgcatggattcggacgcggcggtg
atggacaagttcggcgtgcgcgccgaccagatcgtcgacctgctggcgctgatgggcgat
accgtggacaacgtgcccggcgtggagaagtgcgggccgaagacggccgccaagtggctg
gccgaataccagcatctggacggggtgatggcagcggcgccgaccatgaagggcaagatc
ggcgaaaacctgcgcgccgcgctggagcgcctgccgctgaacaaggagctggtgaccatc
cgcaccgacgtcgcgctggacgccagcccgaccacgctggccctgcgcgatccggatgtg
cccaccctgggcgagctgtacctgcgttacggcttcacccaggcgttgaaggagctgggc
gggccggtaccggcgcctgcagtggccaacgacgcgacgccgagcctgcgtggcaccgcc
gccggctttgcccgtggcagcgccgaagcgccacccgttggcgagctcgatccggcgctg
tcggcgcccggcgagtacgagaccgtgctgaccaccgagcagctgcaggcctgggttgcg
cgcgtgcagcaggctgacctgatcagcttcgacaccgagaccgacgcactggatgcgatg
cgtgcgcgcctggtcggcatcagcgtggcggtggagccgggcaaggccgcctacatcccg
gtcggccacgattatcccggcgcgccggcacagttgccgctggcacaggtgctcgatgcg
ctgcggccggtgctgcaggacccggcgaagaagaagctgggccagcatggcaagtacgac
ctgcacgtgctgcgccgccatggcgtggacgtgcagggctaccacgacgacaccatgctt
gagagcttcgtgctcaattccaccgccacccgccacgacatggattcgctggcccttcgt
tacctgggctacaacaccatcaagttcgaggacgtggcaggcaagggcgccaagcagatt
tcgttctcgcaggtaggcatcgacgaggccggccgctacgccgccgaagacgccgacatc
accctgcgcctgcaccacgcgctgcagccgcagctgctggccgaaccgaccctggacagc
gtgtaccgcagcatcgagatgccgctggtgccggtgctggccagcatcgaggccaatggc
gtgcggatcgacaccgacgaactgcgccggcagagccaggacctgtcctcgcgcatgctg
gccgcgcagcagaaggccaccgaactggccgggcgcagcttcaacctggattcgcccaag
cagctgcaggcggtgttgttcgacgagctgaagctgccggcggtggtgaagacccccaag
ggccagcccagcaccaatgaagaggcgctggaggcgatcgccgaacagcacgagctgccc
cgggtgatccttgagtaccgtggcctggccaaactgcgcagcacctataccgacaagctg
ccggagatggtcaactccgaaaccggccgggtgcacaccagctaccaccagtccggcgcc
gccaccggccgcctgtcctcgtccgatccgaacctgcagaacatcccgatccgcaccgag
gatggccgccgcatccgccgtgcgttcatcgccccggaaggcttccagctgctggcggcc
gactattcgcagatcgagctgcggatcatggcccacctgtccggagacccgggcctggtg
cgcgccttcgagcagggcgccgacgtgcaccgcgccaccgccgccgaggtgttcggccgc
accctggaagaagtgaccagcaacgagcgtcgcgcggccaaggcgatcaacttcggcctg
atgtacggcatgagcgcgttcggactggcccgcaacctcggcatcgaccgcggccaggcg
caggattacgtggcgctgtacttcagccgctatccgggcgtgcgtgacttcatggagcgc
atgcgcgagcaggcccgcgagcagggctacgtggagaccctgttcggtcgccggctgtac
ctgaacgacattcatgcacgtaaccagggcctgcgtgctggcgctgaacgtgcggcgatc
aatgcaccgatgcagggcaccgccgccgacatcatcaagcgcgccatggtcgatgtggac
aaatggctgcgtgacagcggcgcaccggcgcggatgatcctgcaggtgcacgatgaactg
gtgttcgaagccgaggccggtttcatcgaagaactgcgtagcaatgtcgtgcagcgcatg
tcgcaagcggcacaattgcgggtgccgttggtggtcgataccggtactggcagcaattgg
gatgaggcgcactga
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