Stenotrophomonas indicatrix: DAIF1_41670
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Entry
DAIF1_41670 CDS
T07128
Symbol
recB_2
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sinc
Stenotrophomonas indicatrix
Pathway
sinc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sinc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DAIF1_41670 (recB_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sinc03400
]
DAIF1_41670 (recB_2)
Enzymes [BR:
sinc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DAIF1_41670 (recB_2)
DNA repair and recombination proteins [BR:
sinc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DAIF1_41670 (recB_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
LolB
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QBR46562
LinkDB
All DBs
Position
complement(4601743..4605417)
Genome browser
AA seq
1224 aa
AA seq
DB search
MSSGAEGASINTHCPDPYLALPLHGTRLIEASAGTGKTFTLATLFTRLVVEQGLRIGQIL
AVTFTDAATQELRKRIRERLALAARLVDLPPGDDETPDALLTRQVLQRHLQDGTETAKAL
KRRLQVAADEIDLAAIFTIHGFCTRVLREHALESGHTFDPPELLASDRELLEELAADLWR
VHANDPATLEPLTWLWSHPDALAADLRALLASPPLHPPLQPLAVDDPRPALQGAAAELSM
AVREHGERFFLDLCEAVDNKWINGVSYKLGWLHPLGRQLLGWAERGDAAELLSSDRLPAL
LPDALVAKTNKKSADRTPSSPLQAPLERYVALLAQREQWLRATALNFLHALREEATQRLS
VLKRVRRVQTYDDLIDGVARALEGPQRLALVKQLRAQYRIALVDEFQDTDDRQWGIFHTV
FGASPEVGELGLQPALFLIGDPKQAIYGFRGGDIHTYLKAKQVAEQAPALDQNFRSRPAV
LRALQALYDNAGEDAFLERDIQFEPVRPGGVRVDEDYLRDGRAAPALTLRLLRSDGEKAL
GADASRDAATQACVAAIHQILLEARAGTALLRGRPVQPGDIAVLVRSHREATLVQRALAA
VGIPAVAAGKQSLFATSEARDLRALLLALLQPADEGRLRTALATVLLGQRASAIASMERE
GDLQRGFQAQLLHWRERWQRGGPFAVVADVCAAQGERLLALIDGERRLTNYLQLGELLQE
ASAQALGMHGLLDWLQGQMANADQDDEQQLLRLESDARRVQIITLHKSKGLEYPLVFLPF
VGIDGGAPNTATHCTVHLQGERQLHWKLDRDDAWDTASSQREREQRAEDARLLYVGLTRA
EHALWIATGDLAGHAKTRLAPLLGDLQALRTHADVDLDDSAPPGRLPQLLAETEGELPAV
RALTRRVPHDWWVYSFTQLAHADAGNGDDIEAAATELPAPAADEPAGAELPLEPALPDAA
AEDTAPPDPRFMGSRFGNVLHDALENVDFALWSHWQPQQPAPEGQADVLRRSLHDEGYAD
EDLDDGVAVLVPLVGHTLTVPLPEGGALCSVPEHERRAEIEFHFAIEPTAVPVLLQLLHE
HGISSARRGFGLRRRLEGLMTGKIDLTYVRDGRWYVLDYKSNRLPGYSPDLLEIAMRHSE
YDLQALIYTVALHRWLRFRLGAAYDYARDMGGIRYLFCRGLDIAGNGVHVQRFAPELVDA
LDALFAGGEAAQAEMAARARGETA
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcggtgccgagggcgcttccatcaacacgcattgccccgacccttacctggcg
ttgccgctgcacggcacgcgactgatcgaagccagtgccggcaccggcaagacctttacc
ctggcgacgctgttcacccgtctggtggtcgagcagggcctgcgtatcggccagatcctg
gcggtgaccttcactgacgccgccacccaggaactgcgcaagcgcatccgcgagcgactg
gccctggctgcgcgtctggtcgacctgccgcccggcgacgatgaaacacccgatgcgctg
ctgacccggcaggtgctgcaacgtcatctgcaggacggcacggaaaccgcaaaagcgttg
aagcggcgcctgcaggtagccgccgacgagatcgacctggctgcgatcttcaccatccac
ggcttctgcacccgcgtgctgcgcgaacatgcgctcgaaagcgggcataccttcgacccg
cccgagctgctggccagcgatcgcgagctgctggaagaactggcggccgatctgtggcgg
gtgcatgccaacgacccggcaacgctggaaccgctgacctggttgtggtcccacccggat
gcgctggcggctgacctgcgcgcgctgctggcatcgccaccgctgcacccgccactgcag
ccgctggccgtggacgatccgcgcccggcgctgcagggcgcggcggcggaactgtcgatg
gccgtgcgcgagcacggtgagcgcttcttcctggacctgtgcgaagcggtcgacaacaag
tggatcaacggcgtttcctacaagctgggctggctgcacccgctgggccggcagctgttg
ggctgggccgagcgcggcgacgcagcagaactgttgtccagcgaccgcttgccggcgctg
ctgcccgatgcgctggtggccaagaccaacaagaagtccgccgaccgcacaccgtcctcg
ccgctgcaggcaccgcttgagcgctacgtggcactgctggcccagcgcgaacaatggctg
cgtgccacggcactgaacttcctgcacgccctgcgcgaggaagccacccagcgcctgtcg
gtgctgaagcgcgtgcgccgcgtgcagacctacgacgatctgatcgacggcgtcgcccgc
gcgctggaaggcccgcagcggctggccctcgtcaagcagctgcgggcgcagtaccgcatc
gccctggtcgatgaattccaggataccgatgaccgccagtggggcatcttccataccgtg
ttcggcgcctcgccggaggtgggagaactggggctgcagccggcgctgttcctgatcggt
gaccccaaacaggccatctatggcttccgcggcggcgacatccatacctacctgaaagcc
aagcaggtggccgagcaggcaccggcgctggaccagaacttccgctcgcgcccggccgtg
ctgcgcgcgctgcaggcgctgtacgacaacgctggcgaagatgccttcctcgaacgcgac
atccagttcgagccggtgcggcccggtggcgtgcgtgtcgatgaggactacctgcgcgat
ggccgggccgcaccggcgctgaccctgcgcctgctgcgcagcgacggtgaaaaggccctt
ggcgccgatgcgtcgcgcgacgcggcgacccaggcctgcgtggccgcgatccaccagatc
ctgctggaggcgcgtgccggcaccgcgctgctgcgtgggcgcccggtgcaacccggcgat
atcgccgtgctggtgcgctcgcatcgcgaagccacgctggtgcagcgtgcactggccgca
gtcggcattcccgcggtggcggccggcaagcagagcctgtttgccaccagcgaggcccgt
gacctgcgtgcgttgctgctggcgttgctgcaaccggccgacgaagggcgactgcgtact
gcattggcaacggtactgctggggcagcgcgcaagcgcgattgccagcatggagcgtgag
ggggacctgcagcgcgggttccaggcacagctgctgcactggcgcgagcgctggcagcgt
ggcggcccgttcgcggtggtggccgatgtctgcgccgcgcagggcgagcgcctgctggca
ctgatcgacggcgagcggcgcctgaccaactacctgcagctgggcgaactgctgcaggaa
gcctccgcgcaggcactgggcatgcacggcctgctggactggctgcaggggcagatggcc
aatgccgaccaggatgacgagcaacagctgctgcggctggagtccgacgcgcgacgggtg
cagatcatcaccctgcacaagagcaagggcctggaatacccgctggtgttcctgccgttc
gtgggcatcgatggcggcgcgccgaacaccgccacccactgcaccgtgcacctgcagggt
gagcgccagctgcattggaagctggacagggacgacgcctgggacacggccagcagccag
cgcgagcgcgaacagcgtgcagaagacgcgcgcctgctgtacgtcggcctgacccgcgcc
gagcatgccttgtggatcgccaccggcgatctggcaggccatgcgaagacccgcctggcg
ccgttgctcggcgacctgcaggcgctgcgtacgcacgcggacgtagacctggatgacagt
gcgccgccgggccgcctgccgcagctgctggccgaaaccgaaggtgagctgcctgcggtg
cgtgccttgacccgccgggtgccacatgactggtgggtctacagcttcacccagctggcg
catgccgacgctggcaacggcgacgatatcgaagcggcggccaccgaactgccggcaccg
gctgccgacgaacccgccggtgccgagctgccgctggaaccggcgctgccggacgctgcc
gcagaagacactgcgccgccggatccgcgcttcatgggcagccgcttcggcaatgtgctg
cacgatgcactggagaacgtcgacttcgcactgtggtcgcactggcagccgcagcaaccg
gcaccggagggacaggccgacgtgctgcgccgctcgctgcacgacgaaggctatgccgac
gaggatctggacgatggcgtggcggtgctggtgccgctggtcggccacaccctcaccgta
ccgctgcccgaaggcggtgcgctgtgcagcgtgcccgagcatgagcgccgggccgaaatc
gagttccacttcgccatcgagccgaccgcagtaccggtgctgctgcagctgctgcacgag
cacggcatctccagcgcgcggcgcggtttcggcctgcgcagaaggctggaaggcctgatg
accggcaagatcgatctgacctacgtgcgtgatggccgctggtatgtgctggactacaaa
tccaaccggttgccgggctacagcccggacctgctggagatcgccatgcgccacagcgag
tacgacctgcaggcgctgatctataccgtggccctgcatcgctggctgcgcttccgcctg
ggcgcggcatacgactacgcgcgcgacatgggcggtatccgctatctgttctgccggggc
ctggatatcgccggcaacggcgtgcacgtgcagcgcttcgcgcctgagctggtggatgcg
ctggatgccttgtttgcgggcggcgaagcagcccaggccgagatggcggcgcgcgcgcgc
ggagaaaccgcatga
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integrated database retrieval system
