Sesamum indicum (sesame): 105155974
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Entry
105155974 CDS
T04135
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03013
Nucleocytoplasmic transport
sind03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105155974
03015 mRNA surveillance pathway
105155974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105155974
Enzymes [BR:
sind01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105155974
5.6.2.5 RNA 5'-3' helicase
105155974
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105155974
mRNA cycle factors
Common to processing body (P body) and stress granule
105155974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
NPHP3_N
nSTAND3
ATPase
PhoH
AAA_16
SRP54
AAA_22
Ribosomal_S13_N
AAA_25
AAA
AAA_32
Motif
Other DBs
NCBI-GeneID:
105155974
NCBI-ProteinID:
XP_011070275
UniProt:
A0A6I9SKN7
LinkDB
All DBs
Position
LG2:12474781..12490990
Genome browser
AA seq
1276 aa
AA seq
DB search
MDSQTSNLYETASQPDTGNDAYTFLEFNTQGDEDFDYPEFQELSQPIRSSASVWPTPSDS
ISATEVASSSEPSQSASKPRGGGNGGGINNSSSNSNSNNNSKETGVVEALAAGMSGLNFE
DTGGDDEVFEYGKGDFTEHACRYCGVTNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHL
VRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALK
DMNWDLSQWCPLIDDRCFLQWLLKVPSEQEQLRARQISAQQINKIEELWKTNPDATLEDL
EKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNITIRWDIGLNKK
RIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELGASQGV
PVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEMQMVRNTLPR
RFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA
PSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQ
LKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDEST
QATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQ
VQYRMHPALSEFPSNSFYEGTLQNGVTINERQSPGIDFPWPVPNRPMFFYVQMGQEEISA
SGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYK
EIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVL
SKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGIVPNDSF
GSVASSPNADRRGPRSRGPYMPPGPPNGAHKPGVHPSGYAMPRVPLPPYHGGPPSQPYAI
PTRGAVHGPVGAVPQVPQPGSRGFGAGRGNSSAPIGSHLPHQQGAQPPIGSLPSNFNFPS
MENASSQPTVGGPLSQPGYVSNVTGQGPSQTYRDGFSMGGMSQDFLADDFKSQGSHVPYN
VAEFSTQASQSGYTVDYVTQGAQGGFPGSFFNQNSQAGYARFAPGNDYMSQEYMAHGSQG
LFTQAAFNEQSQDEASQNHFGVASANPLQSQGLLNPLYSQPFAHYNTQPLNVQNSQQQHS
SQQGQGSQNQKLHYNG
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcagacgagcaatctctacgagacagcttctcagccggataccgggaacgac
gcttatacgtttcttgaattcaacactcaaggtgatgaggacttcgattaccctgaattc
caagagttgtcgcagcctattcgatcttctgcctccgtctggcccacaccctccgattct
atttccgctaccgaggttgcttcctcctctgaaccgtcccagtccgctagtaagccccgt
ggcggcggtaacggcggtggaattaataacagcagcagcaatagtaatagtaataataac
agcaaggagactggtgtggtcgaggcgttggctgcggggatgagcggcttgaactttgaa
gacactggtggcgatgatgaggtatttgagtatgggaagggagactttactgagcatgct
tgcaggtactgcggtgtcacaaacccagcgtgcgtggttcgatgcaatgtgccgtcctgt
aggaaatggttttgtaattcacgtgggaatacttctggttctcacattgtcaatcatctg
gtgagagcaaagcacaaagaagtttgtcttcacaaagacagtcctctaggagaaactatt
cttgagtgctataactgtggatgtcgaaatgttttccttcttggattcatatctgcgaag
acagaaagtgttgtggttctgctttgtagagaaccctgtcttagcgtcaatgcgttaaaa
gacatgaattgggacttgagtcagtggtgcccccttattgatgatagatgtttcttgcag
tggttactaaaggtcccatctgaacaagagcagttgagggctcgccaaattagtgcccag
cagataaataaaatagaagagctttggaagacaaatcctgatgctaccttggaggatctt
gagaagcctggtgtggatgatgaacctcaacctgtagctttgaagtatgaagatgcttat
cagtatcaaaatgttttcgcaccactcatcaagcttgaagcagactacgataagatgatg
aaagagtctcaaagcaaagacaatatcacgattcgatgggatattggtcttaataagaag
cggattgcttattttgtctttccaaaggaagataatgagttacgccttgtacctggtgat
gaactacggctgcgttattcaggtgatgcggctcatcccgcgtggcagtctgtgggtcat
gtgataaaattgaccgcacaggaggaggttgcgcttgagcttggtgccagtcagggtgtt
cctgttgatgtgaaccatggttttagtgtcgactttgtgtggaagagcacgagtttcgat
cggatgcagggggccatgaaaacatttgctgttgatgaaaccagtgtcagtggctacatt
tatcatcatctgcttggccatgaagttgagatgcagatggttcgcaatactttgcctcgc
cgttttggtgcaccaggtcttccagaacttaatgcatctcaagtttttgctgtcaagagt
gtcctacaaaagcctataagtctcatccaaggtccacctggtactggtaaaactgtcaca
tctgctgcaattgtgtatcacatggcaaaacaaggccaggggcaggttttggtctgtgct
ccaagtaatgtggctgtagatcagctagctgaaaagataagcgccactggtttaaaggtt
gtaagactttgtgctaaatcaagggaagctgttagttcccccgttgagcatttaaccttg
cactatcaggttagacatcttgacacatctgaaaagagtgaacttcacaagttacagcaa
ctcaaagatgaacaaggagaattatccagcagtgacgagaagaaatataaagctctcaag
cgagcaactgaaagggagatatctcagagtgctgatgttatctgttgtacatgtgttggg
gctggagatccgcggttagcaaattttagattccgccaggtccttatcgatgaatctact
caagcaacagaacctgagtgtctaattcctttggttcttggtgcaaaacaggttgttctt
gttggagaccattgccagcttggtcctgtcattatgtgcaagaaagctgcacgggctggt
ttagcccaatctttgtttgaaaggcttgtgcttcttggtgtgaaaccaattagactgcag
gttcaatataggatgcatccagctctctcggagtttccatcaaacagcttttacgaaggt
actcttcaaaatggagtgacaatcaatgaaaggcagtcacctggaattgattttccttgg
ccagtgccaaaccgtcccatgtttttctatgtccagatgggacaagaggagataagtgcc
agcggaacatcatatctaaataggacagaggctgcaaatgttgagaaaattgtgacaaca
ttcttgaagagtggcgtcgttcctagtcagattggtgttataactccttatgaaggtcag
cgagcatacattgtgaattatatgtctcgaaatggtgctctgcggcagcaactgtacaaa
gaaattgaggtggcaagtgtagattctttccaggggcgggaaaaagactatataattttg
tcttgcgtgaggagtaatgaacatcagggcattggtttcctcaatgatccacgccgtctt
aatgttgctctgacacgtgctcgttatggtattgttatcttgggaaatccaaaagttctg
agcaagcagcctctgtggaatggcttattaacacattacaaggaacacgagtgcttggtt
gaaggccctctgaataatctaaagcagagtatggttcaatttcaaaagcccaaaaagata
tacaatgagcgaagacttttctacggtggtggaccaggaattgttcccaatgacagtttt
ggatctgttgcctcaagcccaaatgctgataggaggggtcctcgctcaaggggtccttac
atgccacctggcccgcctaatggtgctcataaacccggtgttcacccttctggttatgca
atgcctcgggtaccccttcctccataccatgggggccctccatcacagccatatgccatt
ccaacccgtggagctgtacatggacctgttggagctgtcccccaagttccacaacctgga
agccgaggatttggtgctggacgtgggaactccagtgcgcccattggtagtcatcttcca
caccagcaaggcgcacagcccccaattggaagtcttccatctaacttcaactttccgtct
atggagaatgctagtagccagccaactgtgggtggaccattgtctcaacctggttatgtt
tctaatgtgactggtcaaggacctagccaaacatatagggatggattctctatgggtggc
atgtctcaggatttcttggccgatgattttaaaagtcagggttcacatgtcccttacaat
gttgctgaattctccactcaggcttctcagagtgggtatactgttgactatgttacacaa
ggggcgcaaggtggatttcctgggagcttttttaaccagaattctcaggctggatatgct
cgttttgccccaggaaatgactatatgtctcaggagtatatggcccatggttcacaagga
ttatttacacaggctgcattcaatgaacaatctcaagatgaggcttctcagaaccacttc
ggtgtggccagtgctaatccacttcagtcacagggtttgctgaaccccctttattcacag
ccatttgcacactacaatactcagccactaaatgttcaaaattctcagcaacagcattca
tcccagcagggtcaaggttcccagaatcagaagctccactacaatggttga
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integrated database retrieval system
