Sesamum indicum (sesame): 105156176
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Entry
105156176 CDS
T04135
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03013
Nucleocytoplasmic transport
sind03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105156176
09122 Translation
03013 Nucleocytoplasmic transport
105156176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105156176
03041 Spliceosome [BR:
sind03041
]
105156176
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
105156176
Spliceosome [BR:
sind03041
]
Complex C
Other components
EJC/TREX
105156176
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105156176
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
ABPF_N
Motif
Other DBs
NCBI-GeneID:
105156176
NCBI-ProteinID:
XP_020555148
UniProt:
A0A8M8V7Y2
LinkDB
All DBs
Position
LG2:14578169..14605754
Genome browser
AA seq
1814 aa
AA seq
DB search
MSLPPLEFVYLTEDSIKELKNSNSNFRFPSPAPVLRFLYELCFTMVRGDLPYQKCKGALE
AVEFLDCGPEGDLGSYFADIVAQMAQDLTMPGEYRSRLIKLAKWLVESTLVPLRFFQERC
EEEFLWESEMIKIKAADLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQVPEPS
KNASAATVGIIKSLIGHFDLDPNRVFDIVLECFELQLDNSVFLDLIPIFPKSHASQILGF
KFQYYQRMEINNPVPPGLYHLTALLVKKDFIDVDSIYSHLLPKDDDAFEHYNAFSAKRLD
EANKIGKINLAATGKDLMDDEKQGDVTVDLFAALDMETMAVAERSSELANNQTLGLLMGF
LAVDDWFHAHQLLERLSPLNPVEHLQICGGLFRLIEKTIFLAYKLVCQTQISTAGVSSGS
NVDSESGSSSVDRSFINLPKELFEMLSSAGPYLYRDTLLLQKTTRVLRAYYLCALELVSD
GDGAFSSHSVTIGNQSPRLHLKDARLRIEEALGTCLLPSLQLIPANPAVGQEIWELMSLL
PYEVRYRLYGEWERDDERFPMILAARQTARLDTRRILKRLAKENLKQLGRMVAKLAHANP
MTVLRTIVHQIEAYRDMIAPVVDAFKYLTQLEYDILEYVVIERLAQGGREKLKDDGLNLS
DWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGNGIELVLLQELIQQMANVQYTENM
TEDQLDAMAGSDTLRYQATSFGITRNNKALIKSTNRLRDSLLPKEEPKLAVPLLLLIAQH
RSVVVIKADVPHIKMVSEQFDRCHGTLLQYVEFLCSAVTPTSTYALLIPTLDELVHQYHL
DPEVAFLIYRPVMRLFRCQSTPSSFWPLECNEALNPGAAEKEPETSDSSTTLVLDVGSSR
KPISWINLLDTVKTMLPAKAWNSLSPDLYATFWGLTLYDLYVPRSRYESEIAKLHAALKA
LEEFSDNSSSAIAKRKKDKERIQESLDRLTMELQKHEEHVESVRRRLAHEKDTWLSSCPD
TLKINMEFLQRCIFPRCTFSMPDAVYCAIFVNTLHSLGTPFFNTVNHIDVLICKTLQPMI
CCCTEYEVGRLGRFLFETLKTAYHWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFI
KVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKIAGVFPVTRKSGINLEKRVAKIKSD
EREDLKVLATGVAAALAARKPSWVTDEEFGMGYLDIKPAPAPASKSLSANATAVQNGAGL
SVSQAEQIGGRTVSAGSLHSDSGNAIKDPRRPDVDNLKQVDELANKQLEENTKVTSKTSV
EPEARPVVKRSAAAGSLAKQAKQDLAKEDDKSGKAIGRTVASSSGNAATIGSAKVANSST
RPSDHNTEIKAEITNAKSSDSRFYSGKDDGTEYSDVHKQPTSRSTHSPRQENLIAASKSS
EKPQKRASPAEEHDRLNKRRKGETDSRDIDGGEVRLSEKERSSDLRAPDKLHVAAFEKTG
SDEQSNSRAIDKPVDRSKDKSSERYDRDYRERVDRPEKSRADDFLSEKLRDRSLERHGRE
RSVERVQERGADRNFDRLAKDDRTKDDRSKVRYGEPSVEKSHVDDRFHGQSLPPPPPLPP
HVIPQSVNASRRDEDGDRRFGNARHTQKLSPRHDERERRRSEENASTLQDDTKRRREDEF
RDRKRDERDAISIKMDERERDKANISKEDIDSNASKRRKLKREHMPSEPGEYLPATPTAP
PVSINLSQSHDGRDRGDRKGVIVQRSGYIEEPGPRVHSKEAASKATRRDPDPMYDREWDD
DKRQRAEPKRRHRK
NT seq
5445 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgcctcctctggagtttgtgtacttgacggaggactccattaaagaattgaag
aactcaaattcaaatttcagatttccttccccggcacccgtcctccggtttctatatgaa
ctctgcttcaccatggtccgaggggacttgccatatcagaaatgtaaaggggccttggaa
gcagtagaatttttggactgtggtccggagggggatttaggatcatattttgctgatatt
gttgcccaaatggctcaagatcttactatgcctggtgaatatcgctctcgtcttatcaaa
ctggcaaaatggttggtggaatctacattagtcccgttgagattttttcaggagcggtgt
gaggaagaatttttgtgggagtctgaaatgattaagataaaggctgcagatctgaagtcc
aaagaggttcgagtaaatactcgtcttctttatcagcaaaccaaatttaacttgcttcga
gaagaaagtgagggctatgccaagctggttacccttctctgtcaggttcctgaaccatca
aaaaatgcatcagctgcaacagttggaattattaagtcattgattggtcactttgacctg
gatccaaaccgagtttttgatattgtattggaatgttttgagcttcagcttgataacagt
gttttcttggacttaattccaatatttcccaagtcacacgcatctcaaattcttggattc
aagtttcaatattatcagcgcatggaaatcaacaatcctgtgccacctggactctatcac
ctcacagctttattggtgaagaaagattttattgacgttgatagcatatattcgcattta
cttcccaaggatgatgatgcatttgagcattataatgccttctccgctaagagacttgat
gaggctaataaaattgggaaaattaatcttgcggccactggaaaggatctcatggatgat
gagaaacaaggagatgttacagtagatctttttgctgctttagacatggaaacaatggct
gttgctgaaagatcctcagaacttgcaaataatcaaactctaggcttgttgatgggcttc
cttgctgtggatgactggtttcatgcccatcaattgttggagcggctgtcaccactgaat
ccagtggaacatcttcaaatttgtgggggattgttcaggctcattgagaaaacaatattt
ctggcttataaattagtatgtcaaacacaaatttcaactgctggtgtatcctctggttct
aatgtcgattcggagtcgggaagttcgtcagtggatagatcttttattaatctgcccaaa
gagctgtttgaaatgctttcttctgctggaccttatctttatcgtgacactttgttgctg
caaaagacaaccagagtgttgagagcttattacctttgtgccctggaacttgttagtgat
ggtgatggagcatttagttctcattctgttacaataggaaatcaaagtcctcgcctccac
ctgaaggatgcaagattaagaattgaggaagcacttggaacatgccttcttccgtctttg
cagttgatacctgcaaatcctgcagttggtcaggagatatgggaacttatgagtctcctc
ccgtacgaggtgcgctatcgtttatatggtgaatgggaaagggatgatgaacgttttcca
atgattttggcagctcggcaaactgcaaggttggatactcgaaggatcctaaaacgtctt
gccaaggaaaatctgaagcaacttgggagaatggttgctaaattggctcatgccaatcca
atgacagttcttcgaacaattgttcatcagatagaggcttacagggatatgattgctcca
gttgtggatgcattcaagtaccttactcagcttgagtatgatatcttggagtatgttgtg
attgaacgcttggctcaaggtggacgggaaaagcttaaagatgatggtctcaatttgtca
gactggctccaatctctggcatcattttggggtcacctgtgtaaaaagtatccatcaatg
gaactcaggggtcttttccagtatcttgtaaatcaattgaagaaagggaatgggattgag
cttgttctcctgcaggaactaatacagcagatggctaacgtgcaatacacggaaaacatg
accgaagatcaattagatgccatggcaggaagtgacactctccgttatcaggctacatca
tttggcatcacaaggaataacaaggcattgatcaagtccactaacagacttagagattct
ttgctcccgaaggaagaacccaagttggcggttccgcttttgcttctgattgcacaacat
cgttctgtggttgtcataaaagcagatgtgcctcatatcaaaatggtcagcgaacagttt
gatcgatgccatgggacccttcttcagtatgtggaatttctttgtagtgcagtgactccc
acatcaacttatgcgttgctgattcccactcttgatgaacttgtacatcaatatcatctt
gatcctgaggtggcctttttgatttatcggccagtgatgagactgtttaggtgtcaaagc
actcccagttccttctggcctttagaatgtaatgaagcactgaaccctggagctgctgaa
aaggagcctgaaacttcggattcatccaccacattggttctggatgttggatcttctcgc
aagcccatctcatggattaatcttcttgacactgtcaagacaatgctgcctgcaaaagcc
tggaatagcttgtctcctgatttgtatgcaaccttctggggtcttactctatatgatctc
tatgtgcccagaagtcgttatgaatctgagattgcaaagctgcacgctgctcttaaagct
cttgaagaattttctgataattccagttctgcaattgctaaaaggaaaaaagataaagaa
agaattcaagagtctctagatcgattgactatggagcttcagaagcatgaagaacatgtt
gagtctgtgcgtcgtcgacttgctcatgagaaggatacgtggttgagttcatgccccgat
actttaaaaatcaatatggagtttttgcagcgttgtatatttccacgctgtacattcagt
atgccagatgctgtatattgtgcgattttcgtaaatacactccattccttgggaacacca
ttctttaacactgtgaaccacattgatgttttgatatgtaaaaccttacaacctatgatt
tgctgctgcactgagtatgaagttggtcgactgggtaggtttttatttgagacgctgaaa
actgcatatcattggaagagtgatgaatcaatatatgagagggagtgcggaaacatgcca
ggatttgctgtctattacagatatccaaacagtcagcgtgttacctatggtcaatttatc
aaggtacactggaaatggagccaacggatcactaggcttttaatccaatgcttggaatcg
actgagtatatggagattcgaaacgcccttattatgctgacaaaaatcgcaggggttttt
cctgttacacggaagagtggtatcaatcttgaaaagcgggtagctaaaattaaaagtgac
gaaagggaggatctcaaagtgttggccactggtgttgctgctgcattagctgctagaaag
ccttcatgggttacagacgaggaatttggcatgggttatcttgatataaagccggctcct
gctcctgcttctaagtctttatcggcaaatgctactgctgtgcaaaatggagctggtctt
agtgtttctcaggctgagcaaattgggggtagaactgtttctgcaggaagcttacattca
gattctgggaatgcaatcaaagaccctagaagacctgatgttgacaatctaaaacaggtg
gatgaattggccaacaaacaattggaagaaaacacgaaagttacttctaagacatctgtg
gaacctgaggcgaggcctgtggtgaaaaggtctgccgctgctggatctcttgctaagcag
gcaaagcaggatcttgccaaggaggatgataaatctgggaaagccattggccgaactgta
gcttcttcttctggaaatgcagccacgattggttcagctaaagtagcaaactcatccacc
aggccttccgaccataacactgaaataaaagctgagatcacgaatgcaaagtcttctgat
tcaaggttttacagtgggaaagatgatggcactgaatattcagatgttcataaacagcca
acttccaggtctactcattctcccaggcaggagaatcttattgcagcttctaagtccagt
gagaaacctcaaaagagagccagtccagctgaagaacatgaccggctaaataaacgtcgg
aaaggcgaaactgattcaagagacatagatggtggtgaggttcgattgtctgaaaaagag
aggtcaagtgatttgcgagctccagataaacttcatgtggcagcatttgaaaagactggc
tctgatgaacagagcaatagtagggctatagataaaccagtggatagatcaaaagataag
agcagtgaaagatatgatagggattatagagaacgagtggatcgtcctgaaaagtcacgg
gctgatgattttttatctgaaaaattgagggacaggtcactagaaagacatggaagagag
cgttccgttgaacgagtacaagaaagaggtgcagataggaatttcgataggctagctaag
gatgatagaactaaagatgatagaagcaaggtgcggtatggtgaaccatctgtggagaaa
tcacatgtagatgacagattccatgggcaaagcttacctccacctccacctctgccacct
catgtcatcccgcaatctgttaatgccagtaggagggatgaagatggtgataggcgattt
ggaaatgccaggcatacacaaaagctttctccaagacatgatgagagagaaaggagaaga
tctgaagagaatgcttccacattacaggatgatacgaaacggagaagagaagatgaattc
cgagatagaaaacgtgatgagcgagatgcaatatcaattaagatggatgagagggagagg
gataaagcaaacattagcaaagaagatattgattcaaatgcttctaaaaggcggaaactc
aaaagggagcatatgccatcagaacctggcgagtatttgccagccacacccacggcgcct
cctgtttcaattaatttgtcacagtctcacgatggacgggataggggagatcgtaagggg
gttatagtccaaagatctggttatatagaggagccaggcccgagggtccacagcaaagaa
gcagccagcaaggcaactcgtcgtgatcccgatccgatgtacgacagagagtgggacgat
gacaagaggcagagagctgaaccgaagaggaggcaccgaaaatag
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