Sesamum indicum (sesame): 105157630
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Entry
105157630 CDS
T04135
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105157630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105157630
03036 Chromosome and associated proteins [BR:
sind03036
]
105157630
Enzymes [BR:
sind01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105157630
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
105157630
mRNA degradation factors
5'-3' decay
Decapping complex
105157630
Chromosome and associated proteins [BR:
sind03036
]
Eukaryotic type
Gene silencing
piRNA pathway
105157630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
Cas3-like_C_2
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
105157630
NCBI-ProteinID:
XP_020553283
UniProt:
A0A8M8V2G0
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All DBs
Position
LG1:complement(6973786..6978275)
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AA seq
275 aa
AA seq
DB search
MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGICILKDCSVLVMDEADKLLSPEF
QPSVEQLISFLPPNRQILMFSATFPVTVKDFKDKYLRRPYIINLMDELTLKGITQYYAFV
EERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRV
FHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVN
LITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCM
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atggttaccacaggaggaaccagtctaaaggatgatatcatgagattgtaccaacctgtg
catttacttgttggaactcctggaagaatacttgatctcacaaaaaaagggatatgcatt
ttgaaggattgctcagtgcttgttatggatgaggctgataagctattatctcctgaattt
caaccttcagtggagcagctgatctcctttctgcctccaaatcgacaaattttgatgttt
tcagctacatttccagtaactgtaaaagattttaaagataaatatctgcggaggccctac
atcatcaatctaatggatgagctcacactcaaaggtatcacccagtattatgcttttgta
gaagaaagacagaaagttcactgcctgaatacactcttctctaagttacaaattaaccaa
tcaataatattttgcaattctgtgaatcgagtggaactgcttgccaagaaaatcacagag
ttaggctattcctgcttttatattcatgctaagatgctgcaagatcatcgtaacagagtg
tttcacgacttccggaatggtgcttgccggaatcttgtttgtactgatttattcacgaga
ggaatagacatccaagctgtcaatgtcgtcataaattttgattttcctaagaactctgaa
acttatcttcacagggtgggtcgctctggaaggtttggacatcttggattggcagtgaac
ctgattacatatgaagatcgcttcaacttgtacaggattgagcaggagcttggcacagaa
ataaaacaaattcctccacatatagatcaagctatttactgtatgtga
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