Sesamum indicum (sesame): 105158000
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Entry
105158000 CDS
T04135
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03030
DNA replication
sind03420
Nucleotide excision repair
sind03430
Mismatch repair
sind03440
Homologous recombination
sind03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
105158000
03420 Nucleotide excision repair
105158000
03430 Mismatch repair
105158000
03440 Homologous recombination
105158000
03460 Fanconi anemia pathway
105158000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sind03000
]
105158000
03032 DNA replication proteins [BR:
sind03032
]
105158000
03400 DNA repair and recombination proteins [BR:
sind03400
]
105158000
Transcription factors [BR:
sind03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
105158000
DNA replication proteins [BR:
sind03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
105158000
DNA repair and recombination proteins [BR:
sind03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
105158000
MMR (mismatch excision repair)
105158000
DSBR (double strand breaks repair)
HR (homologous recombination)
105158000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RMI1_C
Rhabdo_glycop_CD
Motif
Other DBs
NCBI-GeneID:
105158000
NCBI-ProteinID:
XP_011072889
UniProt:
A0A6I9SU34
LinkDB
All DBs
Position
LG3:complement(10785625..10789265)
Genome browser
AA seq
622 aa
AA seq
DB search
MAKAVSPDAISFILENPYPDSSSDLPEIIVQVLDLKPTGNKYMFMASDGKLKVRALLQSA
LSSEVTSGNIQNLGLIRVLDYTLNDIPTKNEKFLIVSKCEAVSPALEAEYKAEVKTERSG
IVLKQKQEMDVGSEVKTEGIVLKPKEEVVAKSAAQIVHEQHGNMAPAARMAMTRRIHPLV
SLNPYQGIWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFFD
KFQMGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEARNEATFIPETKFNFVPID
ELGPYVNGRELVDVIGVVQSVSPTMSIRRKINNETIPKRDITIADETKKTVVVSLWNDLA
TSIGQELLDMADKSPVVAIKSLKVGDFQGVSLSALSKSIVVVNPDTPEAKKLKSWYDSEG
KDTALAAIGSGLSPSTQSGTRSMYSDRVSLAHITSNPSLGEDKPVFFCIKAYISYIKPDQ
AVWYRACKTCNKKVTEAVGSGYWCEGCQKNEDNCSLRYIMAVKVSDASGEAYLSVFNEQA
EKIIGCSADELNDLKSQDGDSAYQAKLKEATWVPHLFRVSVTPHEYNNEKKQRITIRAVS
PIDYATESKYLVEEISKMRVSK
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagcagtgagcccagatgcgatttcgtttattctagagaacccatatcccgat
tcttcttcagatttgccggaaatcattgtccaagtgctcgatctcaagcccaccggcaac
aagtacatgttcatggcgagtgatgggaaactgaaggtgagggctctgttgcaatcggct
ttgtcgtctgaagtaacatctgggaacatacagaatttgggtctgattcgggttcttgac
tacaccctcaatgacatcccaacaaagaatgagaagttcttgatagtatcaaagtgtgag
gctgtgtctcctgcgcttgaggcagagtacaaggctgaggtgaaaaccgagagaagtggg
atagtgttgaagcaaaagcaggaaatggatgttgggagtgaggtgaaaactgagggtatt
gttctgaagccaaaggaagaagttgttgctaaatctgctgctcaaatagttcacgaacaa
catggaaacatggcacctgctgcaagaatggcaatgactcgaagaatccatccacttgtt
tccttgaatccttatcaaggaatctggacaataaaagttcgggtcacgagcaaaggaaac
atgcggacttacaagaatgccagaggagaaggctgtgtgttcaatgtagagttgactgat
gaagatgggacacaaatacaagcaacaatgttcaacgaggctgcaaggaagttctttgat
aaattccagatggggaaggtctattacatatcaaagggaactctgaaagtagcaaacaag
caattcaagacagtacaaaatgattatgaaatgaccttaaatgaaaattctgaagttgag
gaagcccgtaatgaggcaacgtttattcctgaaacaaaattcaattttgtcccgattgat
gagctaggtccttatgtcaatggaagggaacttgtggatgttattggggttgttcagagc
gtatctcctactatgagtattagaaggaaaatcaacaatgagactattccaaaacgtgat
attaccattgctgatgagacgaaaaaaactgttgtggtgtctctgtggaatgatcttgcc
acaagcataggacaagaactgcttgatatggctgataaatctcctgtagttgcaataaag
tcccttaaagttggtgattttcagggggtatcactatcagcactgagcaaaagcattgta
gtagtaaatccagacaccccagaagccaaaaagttgaaatcttggtatgattctgaaggc
aaagacactgctttggctgctataggttctggtttaagcccctctacgcaaagtggaact
agatctatgtactctgacagagtctccctagctcatatcaccagtaacccatccctggga
gaggacaagcctgtatttttctgcattaaggcatacattagctacattaaacctgatcaa
gcagtgtggtaccgggcatgcaaaacatgtaacaagaaggttactgaagctgttgggtct
ggctactggtgtgaagggtgccagaagaacgaagataattgcagtttgagatatataatg
gcagttaaagtttctgatgcaagtggcgaagcatatctatcagttttcaatgaacaagca
gagaaaataattggatgctcagcagatgaactaaacgacttaaagtctcaggatggagat
agtgcttatcaagctaagctgaaggaagctacatgggttcctcaccttttccgagttagc
gttactccgcatgagtacaataatgagaagaagcagaggataaccatcagggctgtttcc
cccattgattatgcaactgaatccaagtatttggttgaagaaatatcaaagatgagagtt
tctaaatag
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