Sesamum indicum (sesame): 105158176
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Entry
105158176 CDS
T04135
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105158176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105158176
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105158176
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105158176
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
105158176
NCBI-ProteinID:
XP_011073532
UniProt:
A0A6I9STU2
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Position
LG1:complement(79638..81137)
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AA seq
271 aa
AA seq
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MFELPKNDQIQIREVWNDNLEQEFALIRDIVDGYPYVAMDTEFPGVVLRPVGNFNHINQY
NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTNTCCIWQFNFREFNVSEDIFANDSIEL
LRQSGIDFKKNNELGIDAGRFAELLMSSGIVLNDGMCWVTFHSGYDFGYLLKLLTCRSLP
ETPAGFFLLLNIYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTS
CAFKKLKDNFFNGSTEKYAGVLYGLGIENGS
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagttgccaaagaatgaccaaattcagattagggaggtgtggaatgacaatctt
gaacaagaatttgctctgattcgtgatatagtcgatggttatccctatgttgctatggat
actgagttcccgggcgtggttcttcgacccgttggcaactttaatcatatcaatcagtac
aattatcaaaccttgaaggataatgttgatatgttgaagttgattcagttgggtctcaca
ttttcggatgaaaatgggaatttacccacttgtgggactaatacttgctgcatttggcaa
tttaatttccgtgaattcaatgtcagcgaggacatttttgctaatgattcaattgaattg
ttgaggcaatctgggattgattttaagaagaataatgagctgggaattgatgctggccgc
tttgcagagctcttgatgtcttccgggattgttttgaatgatggcatgtgttgggtgaca
tttcacagtggttatgactttggatacctacttaagttattgacttgtagaagtttgccc
gagactccagcagggttcttcctattgctgaacatatacttcccaatggtgtatgatatc
aagcatttgatgaagttctgcaatagccttcatggaggactgaataagctggcagaactt
ttagaagttgagagaattggcgtctgtcatcaggcaggttctgatagtttactcacgtca
tgtgctttcaagaagttaaaagataacttcttcaatggatccacagagaagtatgctggt
gtgttgtatggtcttggcattgagaatggatcttga
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