KEGG T04135: 105158320

Sesamum indicum (sesame): 105158320

Entry

105158320         CDS       T04135

Name

(RefSeq) probable CCR4-associated factor 1 homolog 6

K12581

CCR4-NOT transcription complex subunit 7/8

Organism

sind Sesamum indicum (sesame)

Pathway

sind03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:sind00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105158320
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sind03019]
    105158320
Messenger RNA biogenesis [BR:sind03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     105158320
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     105158320

SSDB

Motif

Pfam:

CAF1

Other DBs

NCBI-GeneID:

105158320

NCBI-ProteinID:

XP_011073341

UniProt:

A0A6I9SVA3

LinkDB

Position

LG3:13845221..13846895

AA seq 270 aa
MSLLPKSDSVQIREVWAGNLDEEFALIREIVDEYPYIAMDTEFPGIVLRPVGNFKNANDY
HYQTLKENVNLLKLIQLGLTFSDEKGNLPTCGTDKFCIWQFNFREFNPDEDVFANDSIEL
LSQSGIDLVRNNENGIDARRFAELLMSSGIVLNDNVNWVTFHSGYDFGYLLKLLTCQNLP
DAQAAFFTLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTC
CTFMKLKGNFFSGSMDKYAGVLYGLGVESG

NT seq 813 nt +upstreamnt +downstreamnt
atgtcccttctgcccaaaagcgactcggttcaaatccgggaggtttgggctggcaatctg
gatgaagaattcgcattgattcgtgaaattgtcgatgagtacccgtatattgcgatggac
acggagttccccggcatcgtcctccggcccgtcggcaatttcaagaatgcaaatgattac
cattaccagacattgaaggagaatgtcaacttgttgaagctgatccagttaggactcaca
ttctccgacgagaaggggaatctgccaacatgcggaaccgacaagttctgcatctggcaa
ttcaatttccgcgaattcaatcccgatgaggatgtctttgccaatgactcgattgagctg
ttgagccagagcggcattgatcttgtgaggaacaatgaaaacggcatcgacgccaggcgt
tttgcggagctcttgatgtcgtctggtatcgttctgaacgacaacgtgaattgggtgacg
tttcacagtggatatgatttcgggtacttgctcaagctcttgacgtgccagaacttgccc
gatgctcaggccgcgttctttacattaatcaatgtgtattttccggtggtttatgatata
aagcatttgatgaagttctgtaacagtttgcacggtgggctgaacaagctggcggagttg
ctggaggtggagagagtcggggtgtgccatcaggcagggtcagatagtttgctcacttgt
tgtacgttcatgaagttgaaagggaacttcttcagcggttcgatggacaagtatgccggt
gtgttgtatggcttaggtgttgagagtggataa

DBGET integrated database retrieval system