Sesamum indicum (sesame): 105158359
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Entry
105158359 CDS
T04135
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
105158359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sind03400
]
105158359
Enzymes [BR:
sind01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
105158359
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
105158359
DNA repair and recombination proteins [BR:
sind03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
105158359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
Fpg-like_C
Motif
Other DBs
NCBI-GeneID:
105158359
NCBI-ProteinID:
XP_011073391
UniProt:
A0A6I9SSD8
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All DBs
Position
LG3:14219401..14223090
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AA seq
453 aa
AA seq
DB search
MPELPEVEAARRALEEHCVGKRIKKSTVADDSKVIDGVSSKDFEAALVGKTIVAAHRKGK
NMWLQLDSPPFPSFQFGMAGALYIKGVAVTKYKRSAVKDTDEWPSKYSKVFVELDGGLEF
SFTDKRRFAKVRLLDNPASVPPISELGPDALLEPMTVDRFYNSLTKKKIGIKALLLDQSF
ISGIGNWMADEVLYQSRTHPLQTASSMSKEACAALLKCINEVTEKAIEVGADSSQFPSNW
IFHSREKKPGKAFVDGLALDLWKKIEFITAGSRTTAYVPELQKLTGNQAVKEAGKPSKRT
AAGNSNADDESGDEDKPIEPKAVGGRKTGRTRKPSAMKKPSTSVSDSDDDEENSADDVTS
KRKQGAKNPPARSKAKGLNENKGQRRQTKGRTAPAKRKHEESDHDTISSSGGDNEDQHEE
AEEVMNGKRRGAGASSKKRVAISQNRKQKQNAK
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgccggagcttccggaggtggaggcggcgcgtcgggcgctagaggagcactgcgttggg
aagaggatcaagaagtcgacggtcgccgacgactctaaagtcatagacggtgtctcttcg
aaggacttcgaggccgcgctcgtcgggaaaactatagtcgccgcccaccgtaagggaaag
aacatgtggcttcagctcgattcccctcctttcccctcttttcaattcggaatggctgga
gctctgtatataaagggagttgctgtcactaaatataagcggtctgccgtgaaggataca
gatgagtggccttccaagtattctaaagtatttgtcgaactagatggtgggttggaattc
tctttcactgacaagaggcggtttgctaaagttcgtttgctcgacaatcctgcttctgtg
cccccaatctctgagcttggtcctgatgcattactggagcccatgacagtagatcggttt
tacaattccttaacaaagaagaaaattggaatcaaagctcttttgcttgaccagagcttt
atttcgggcattggtaattggatggctgatgaagtgttatatcaatctcgaacccatcca
cttcagactgcctccagcatgtccaaagaagcctgtgcagctttgctcaaatgcattaat
gaggtaactgaaaaggctattgaagttggggccgatagtagtcagttccctagtaattgg
atattccattccagggaaaagaagcctggcaaggcttttgttgatggtttggctcttgac
ctgtggaagaaaattgaattcatcactgctggtagcaggacaacagcctatgtcccagag
ttgcaaaagttgactggcaatcaagctgtgaaagaagcaggtaagccttctaaaagaact
gctgctggtaatagcaatgctgatgatgaatcgggagatgaggacaagccgattgaacca
aaagctgtgggagggaggaaaactggtagaactaggaagccatctgcaatgaaaaagccg
agcacaagtgtttcagattctgacgatgatgaggaaaatagtgctgatgatgtgacttct
aagagaaagcaaggggctaagaaccctcctgcaagaagcaaagcgaagggactcaatgaa
aacaaaggacaaaggagacaaactaaaggaagaactgcacctgcaaagagaaagcatgaa
gaaagtgaccatgacaccattagttcaagcgggggtgataatgaggatcaacatgaagag
gctgaggaggtgatgaatggaaaacggaggggagctggggcatcatctaagaagagggtt
gcaatcagtcaaaataggaagcagaagcaaaatgctaagtaa
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