Sesamum indicum (sesame): 105159075
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Entry
105159075 CDS
T04135
Name
(RefSeq) eukaryotic initiation factor 4A-3 isoform X1
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03013
Nucleocytoplasmic transport
sind03015
mRNA surveillance pathway
sind03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105159075
09122 Translation
03013 Nucleocytoplasmic transport
105159075
03015 mRNA surveillance pathway
105159075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105159075
03041 Spliceosome [BR:
sind03041
]
105159075
03009 Ribosome biogenesis [BR:
sind03009
]
105159075
03012 Translation factors [BR:
sind03012
]
105159075
Enzymes [BR:
sind01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105159075
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105159075
mRNA cycle factors
Stress granule specific factors
105159075
Spliceosome [BR:
sind03041
]
Complex C
Other components
EJC/TREX
105159075
Ribosome biogenesis [BR:
sind03009
]
Eukaryotic type
90S particles
Helicases
105159075
Translation factors [BR:
sind03012
]
Eukaryotic type
Initiation factors
eIF-4
105159075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
105159075
NCBI-ProteinID:
XP_011074356
UniProt:
A0A6I9T298
LinkDB
All DBs
Position
LG1:713450..718202
Genome browser
AA seq
407 aa
AA seq
DB search
MAAAVQRGGGGRRVMEEEDGKLVFETSKGVEPISSFDEMGIKDDLLRGIYNYGFEKPSAI
QQRAVLPIISGRDVIAQAQSGTGKTSMIALAVCQIVDTKSSEVQALILSPTRELAAQTEK
VILAIGDYINVQAHACIGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLL
ILDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEMTSKFMTDPVRILVKRD
ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTAKMRENNFTV
SSMHGDMPQKERDAIMGEFRSGQTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR
IGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggtgcagagaggaggcgggggccggcgggtgatggaggaggaggatggt
aagctcgtatttgagacgtcgaaaggcgtggagcctatatcgagcttcgacgagatgggc
ataaaggatgatctccttagaggaatatacaactacggattcgagaagccttccgccatt
cagcagcgtgcggttcttccgattatctctggacgtgatgtaattgctcaggcgcaatct
ggtacgggcaagacttctatgattgccctcgctgtttgccagattgtcgacaccaagtcc
tctgaggtccaagccttgattctgtcacctacaagagagttggctgcccaaacagaaaaa
gtaatactggcaattggtgactatataaatgtacaagctcatgcttgcattggaggcaaa
agtgtgggcgaggatataagaaaactagagcatggagttcatgtggtgtccggcactcct
ggcagagtttgcgacatgatcaagagaagaactttacgaactagagcaatcaaattatta
attctggatgaatcagatgaaatgctgagcagaggctttaaggatcagatatatgacgtt
tacagatatcttccacctgagctgcaggttgtcctaatctctgccacccttccaaatgaa
atattggagatgacaagtaagttcatgaccgatccagttaggatccttgtaaagcgtgat
gaattgacactggagggaatcaaacaattctttgtcgcagtggagagagaagaatggaaa
tttgatactttatgtgatttatatgatacccttaccatcacccaggctgttatcttctgt
aacacaaagcgaaaggtcgattggttgacagcaaaaatgcgcgagaataattttactgtc
tcatctatgcacggagatatgccacagaaggaacgggatgccattatgggagaatttcga
tctgggcagactagagttcttatcacaacagatgtttgggccaggggactggacgttcaa
caggtttccctagtgatcaattatgatcttcctaacaaccgagagctttacattcatcgc
attggacggtccgggcgttttgggagaaagggtgttgccataaattttgtgaagaatgat
gacatcaaaatcctcagagatatcgagcaatactacagtacacagatcgatgaaatgcca
atgaatgtggctgatttaatatag
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