Sesamum indicum (sesame): 105159138
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Entry
105159138 CDS
T04135
Name
(RefSeq) polyadenylate-binding protein 8-like
KO
K13126
polyadenylate-binding protein
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03015
mRNA surveillance pathway
sind03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105159138
09123 Folding, sorting and degradation
03018 RNA degradation
105159138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105159138
03041 Spliceosome [BR:
sind03041
]
105159138
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105159138
mRNA cycle factors
Stress granule specific factors
105159138
Spliceosome [BR:
sind03041
]
Complex C
Other components
Complex C specific factors
105159138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_7
RRM_Nup35
RRM_RdRP1_2
YflT
RRM_MARF1
SET_assoc
HPS3_C
RRM_8
Motif
Other DBs
NCBI-GeneID:
105159138
NCBI-ProteinID:
XP_011074396
UniProt:
A0A6I9T2D6
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All DBs
Position
LG3:complement(21838476..21844068)
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AA seq
654 aa
AA seq
DB search
MAQIQVQHQNVAAAGPNGVAAPSGAAAAAAGQFMSTSLYVGDLDLNVTDSQLYDLFNQVG
QVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALEVLNFTPLNNKSIRVMYSHRDPSIRK
SGTANIFIKNLDKTIDNKALHDTFSSFGNILSCKIATDPNGQSKGYGFVQFDSEDAAQSA
IDKLNGMLINDKQVYVGHFLRKQERETALHKTKFNNVYVKNLAESTTDDDLKKIFGEYGA
ITSSVVMRDADGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKLEREQEL
KSRFEQTAREAVDKFQGLNLYIKNLDDSIDDDKLKELFTEFGNITSCKVMRDPSGISRGS
GFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMA
PRMPMYPPGAPGIGQQLFYGQAPPAIIPQAGFGYQQQLVPGMRPGGAPMPNFFVPLVQQG
QQGQRPGGRRGGGPVQQNQQPVPLMQQQMLPRGRMYRFPPGRNVPDVPIPGVAGGMLSVP
YDMGGMLPRDAAIPQPMPITALASALANATPEQQRTMLGENLYPLVDQLEHEHAAKVTGM
LLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVQQANSPADQLASLSLNDNLVS
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagattcaagtgcagcaccagaatgtggcggctgctgggcccaacggagtggcg
gcgccaagtggagcggcagctgcggcggctggacagtttatgtcgacctctctgtacgtg
ggggacttggatttaaacgtgacggactctcagctgtatgatctgttcaatcaggtcgga
caggttgtgtcggttagggtttgccgagacctcagtactcgccgcagccttggctatggt
tatgtcaactatagcaatccccaggatgcggcaagagctctggaagttttgaatttcact
ccccttaataacaagtcaatccgagtcatgtattcgcatcgggacccaagtattcgtaaa
agtggaacagcaaatatcttcatcaagaatttggacaaaacaattgataacaaagctttg
cacgacactttttcaagctttggcaacatcctctcgtgcaagattgcaacagaccctaat
ggtcaatcaaaaggctatggatttgtacaatttgattctgaagacgctgcacaaagtgct
atagataagttaaatggcatgcttattaatgataagcaagtgtatgttgggcatttcctt
cgcaagcaggaaagggaaactgcactacataagacgaaattcaacaatgtttatgtgaaa
aatctagctgaatctactacagatgacgatttgaagaaaatttttggtgaatatggagca
atcactagttctgtagtgatgagggatgctgatggaaagtcaaaatgttttggatttgtc
aattttgaaaatgctgatgatgctgctaaggctgttgaagctctaaatggaaagaaagtt
gatgacaaggagtggtatgtaggaaaagcccagaagaagttggagcgagaacaagaactt
aagagtcgattcgagcagaccgcccgggaagctgttgacaaatttcaagggcttaattta
tatattaaaaacttggatgatagcattgatgatgacaaactgaaagaactgtttacagag
ttcggtaatatcacttcatgcaaggttatgcgagatcctagtggcataagtagaggatct
ggatttgttgccttttcaaccccggaggaagcttctagagcactttctgaaatgaatggg
aaaatggtggtcagcaagccattgtatgttgcgcttgctcagcgtaaagaagagcgaaga
gcaaggttgcaggctcaattttcacaaatgaggcctgttgcaatgccaccatcaatggct
ccccgtatgcctatgtatccccctggtgctcctggtattgggcagcagctattttatggg
caagctcctcctgctataattcctcaggccggttttggctatcagcagcagcttgttcct
ggaatgcgtccaggaggtgctcctatgccaaatttctttgtgcccctagtccaacagggt
cagcagggccaacgtcctggtggcaggcgaggaggtggtcctgtgcaacaaaatcagcag
cctgtgccgctgatgcagcagcaaatgctaccgaggggtaggatgtatcggtttcctcct
ggtcgtaatgtgccagatgtgcccatacctggggttgcgggagggatgctttctgttcca
tatgacatgggtggcatgcttcctcgagatgctgctattccacagcccatgccaattact
gctcttgcttctgctcttgcaaatgcaactcctgaacagcagagaactatgttgggtgag
aacttgtaccctcttgttgatcaactggagcatgagcatgctgcgaaggttacaggcatg
cttttggagatggaccagactgaggttctgcatttgcttgaatctcctgaggctttgaaa
gccaaggttgctgaggcgatggatgtcctgaggaatgttcagcaggctaacagccctgcc
gaccaacttgcctcactttcactgaacgacaaccttgtttcttga
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