Sesamum indicum (sesame): 105159640
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Entry
105159640 CDS
T04135
Name
(RefSeq) probable splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105159640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sind03021
]
105159640
03041 Spliceosome [BR:
sind03041
]
105159640
03036 Chromosome and associated proteins [BR:
sind03036
]
105159640
Transcription machinery [BR:
sind03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
105159640
Spliceosome [BR:
sind03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
105159640
Complex B
105159640
Complex C
U2 SnRNP specific factors
105159640
Chromosome and associated proteins [BR:
sind03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
105159640
TFTC complex
105159640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
105159640
NCBI-ProteinID:
XP_011075061
UniProt:
A0A6I9SXK2
LinkDB
All DBs
Position
LG4:197007..209340
Genome browser
AA seq
1382 aa
AA seq
DB search
MAVSEESSSSRPNTSNSHSNSRSPPKHNADAYYLAKTVLRGSVVLQAVCGHFRSTSSYDV
VFGKETSVELVIIDEDGIVQSICEQPVFGTIKDLVVLPWNEKLQVQSPKITGKDMLVVIS
DSGKLSFLTFCNEMHRFFPLTHVELSAPGNSRHQLGRMLAVESSGCFLAASAYEDQLAIF
SLSLSSTGDIIDKRIFCPPEKDGRLKTARGSTNISGTIWSMCFISEDYHQASKVRKPVLA
ILLNRRGSFYRNELLLLEWNIEEEAVNVIYQFAEAGPLAYNIVEVPHSHGFAFLFRAGDI
VLMDFRNVHSPSCVYRRSLNFTPLEEQSFKNIIRIPDIMDEDGISSFAASALLELGDINK
SDDPMNIDDYSCIQPGSNYVCSWSWEPGVTNSPRILFSADSGDLYVIEVLFESDGVRVNL
SDSLYKGLPSNALLWLDGGFVAAIVDMADGMVLKFEDGFLQYRSSIQNIAPILDMCIVDY
PDEKHDQMFACSGMASEGSLRIIRSGISVEKLLKTAPIYQGVTGTWTVKMKVSDPYHSFL
VLSFVEETRVLSVGVSFSDVTESVGFKPDVCTLACGIVADGAMVQIHQCGVRLCLPVRTV
HPEGIPLSSPICTSWFPDNMTISLGAVGQGMIVVATSSPCFLFILGLRSSSQYHYEVYQT
HCVKLQNELSCISIPQKHLELNRILMDYAADSPMAGLPYGNRVDNLFVIGTHKPSVEVVS
FTHDKGLQVLAIGVISLTNTMGTTISGCVPQDVRLVLVDRLYVLSGLRNGMLLRFEWPSA
STLSSTGPPGQHTLGSSCTVNFHVLSNSMSSNNKDRPMFMSNASGKREGEIPVNLQLIAV
RRIGITPVFLVSLSDSPDADMIALSDRPWLLQTARHSLSYTSISFQPSTHVTPVCSSECP
RGILFVAENSLHLVEMVPSKRLNVQKFHLGGTPRKVLYHNESRLLLVMRTELDNDSCSSD
VCCVDPLSGSVLSSFKFEPGETGKCMELVKVGNEHVLVIGTSLSAGPAIMPSGEAESTKG
RLVVLCIEHMQNSDSGSVTQRSSPIGGYAAEQLSSSSLCSSPDDNSCDGIKLEETEAWHL
RLAYSTIWPGMVVAVCTYLDRYFLASAGNSFYVCGFPNDNSQRVRRLAVGRTRFTIMTLT
AHFTRIAVGDCRDGILFYSYHEDSRKLEQVYCDPVQRLVADCVLMDVDTAFVSDRKGSVV
VLSCVNHVEDNASPERNLTLCCSYYMGEIAMSMRKGSFSYKLPADDMLKDSDAAGNNINS
SRNCIMASTLLGSIIIFIPMTREEYELLEDVQARLVVDPLTAPILGNDHNEFRSRESRVG
TPKILDGDILAQFLELTSMQQEAVLALPLGTPNTAMLSMKPSMPAKVNQVVRLLERVHYA
LN
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atggcagtttcagaagaatcctcctcatcccgcccaaacacatccaactctcacagtaat
tcgcgatcaccaccaaagcacaacgctgatgcttattatttggccaaaacagtcctcaga
ggcagcgtcgttcttcaagctgtctgcggccactttcgctccacctcctcctacgacgtc
gtgtttggcaaggagacatcagtagagttagttataattgatgaagatgggattgttcaa
tctatttgtgaacaacctgtgttcggtaccataaaagatcttgtagtccttccctggaat
gagaagcttcaagtgcagagtccgaagataacagggaaggatatgttggttgtcatttct
gattcaggaaagctgtcgtttctcactttttgcaatgaaatgcacaggtttttcccctta
acccatgttgaactttctgctcctggaaattcaaggcatcaacttggaaggatgctggct
gttgagtccagtggctgttttctggctgctagtgcgtacgaggaccaactggctattttc
tcactctcactgtcctctactggtgatatcattgataagagaattttctgtcctcctgaa
aaagatgggcgcttgaaaactgcaagaggttctactaatatttctggtactatatggagt
atgtgcttcatctcggaagattaccatcaggctagcaaggtgcgcaagcctgtactggcc
attcttctgaataggcggggatctttttaccggaatgagcttctgttgttggaatggaat
attgaggaagaagctgtcaatgttatatatcaatttgcagaagctggaccattagcatat
aatatagttgaagtccctcattctcatggatttgccttcttgtttagggctggtgatatt
gtcctaatggatttcaggaacgttcacagcccttcgtgtgtctataggagaagtttaaat
ttcacaccgttggaggaacaaagttttaaaaatattattagaataccagatattatggat
gaagatggcatttctagctttgctgcttctgctctgttggagcttggcgacataaataaa
agtgatgatccaatgaatattgatgattatagttgtatacaacctggttccaattatgtc
tgctcatggagttgggaacctggtgtgacaaatagtcctaggatattatttagtgctgat
tctggagatctttatgttattgaagtcctttttgagtctgatggtgtcagggtaaatttg
tctgattctctttacaaaggtctaccttcaaatgctctgttatggcttgatggtgggttt
gttgcagctatcgttgacatggctgatggaatggtcttaaaatttgaagatgggtttcta
caatacagaagttcgattcaaaacatagcaccaatcttggatatgtgcattgttgattat
cccgatgagaaacatgatcaaatgtttgcctgctctggtatggcatctgaggggtccttg
cggattattcggagtggtatcagtgtggagaaattgttaaaaactgctcctatttatcaa
ggtgtaactggtacctggacagtcaaaatgaaagtttctgatccctatcattcttttctt
gtactatcatttgttgaagagaccagggttctgtctgtcggcgtcagcttttcagatgta
actgaatcagttggttttaagcctgatgtctgtactttggcttgtggtattgtggctgat
ggtgcgatggtccaaattcaccaatgcggagttaggctttgtttgcctgttagaactgtg
catccggaaggtattcctctgtcatctccaatatgcacgtcgtggttccctgataatatg
actataagtctcggagctgttgggcaaggcatgatagtggtagcgacatccagtccatgc
ttcttgttcatccttggtcttagatcttcatcacaatatcattatgaagtatatcaaacg
cactgtgttaaattgcagaatgagttgtcttgtatttccattccgcagaagcacctcgag
ttgaatagaattttgatggactatgcagctgacagccctatggcaggtcttccatatgga
aatcgtgttgacaatttgtttgttattggtactcataagccttcagtagaagttgtatcc
tttacacatgataagggactacaagttcttgccataggggtcatttcgttgactaacacc
atgggaactactattagtggatgtgttcctcaagatgtaaggcttgtgttagttgatcgt
ctatatgttctttcaggattgaggaatggaatgttacttaggtttgagtggcctagtgcc
tctacactgtcctcaacagggccacctggtcaacacactcttggcagttcttgtacagtc
aacttccatgtcttgtcaaattctatgtcttcaaacaataaagaccgaccaatgttcatg
tccaatgcatctggaaagagagaaggagagattccagttaatcttcagctgattgccgta
cgccgtattggtattacacctgttttcttggtttcactgagtgattcccctgatgctgat
atgattgctctcagtgataggccttggttattgcagactgcaagacacagcctctcttat
acatccatctcctttcaaccttctactcacgtcactcctgtgtgttcaagtgaatgcccc
agaggaattctatttgttgccgagaatagtcttcatttggtggaaatggtgccaagtaag
aggcttaatgtacaaaaatttcatcttgggggcactccgaggaaagtgttgtatcataat
gagagtagattgttgcttgtcatgaggacggaattagataatgattcatgttcatctgat
gtttgttgtgtggatcctctaagcggctcagtgttatcatctttcaaatttgaacctggg
gagacagggaaatgcatggagttagtaaaggttggaaatgagcatgtgttggtgattgga
actagcctatctgctgggccagcaataatgccaagtggtgaagctgaaagtacaaaaggt
cggctggtggttctctgcattgaacacatgcaaaattcagacagtggttctgtaacccaa
cgtagttcacctattggtggctatgctgcagaacagctctctagcagtagtctctgcagc
agcccagatgacaatagctgtgatggaattaaacttgaagaaactgaagcatggcacttg
cgcttagcttattcaaccatctggcctggaatggttgttgctgtctgcacttaccttgat
cgatatttcttagcttctgctggtaattctttttatgtatgtggttttccaaatgataac
tctcaaagagtgagaagattggctgttggaagaacacgttttactatcatgactctgact
gcgcacttcaccaggatagctgttggtgattgccgtgatggaattcttttctattcatac
catgaggactcgagaaaattagagcaggtttattgtgatcccgtccagaggctagttgct
gattgtgttcttatggatgttgatactgcatttgtttcagaccgtaagggaagtgttgtt
gtcttgtcatgcgtgaatcatgtagaagataatgcaagtcccgaacgcaatttaactcta
tgttgctcgtattatatgggcgagattgccatgagcatgaggaagggatcattttcatac
aaactcccagcagatgacatgttgaaggactctgatgctgctggtaataacattaactcg
tcaagaaactgtatcatggcatctacgctgttagggagtataataatcttcattccaatg
acaagggaggaatatgagctattagaagatgttcaggctaggctggtggttgacccactt
actgctcctattttggggaatgatcacaatgagtttcgaagccgtgaaagtcgggtcgga
acacctaagatactcgatggtgacattttggctcaattcttggagcttacaagcatgcaa
caagaggcagtattagcattaccacttggcacaccaaacactgctatgttaagcatgaag
ccatctatgcctgctaaggttaatcaggttgttcgactgcttgaacgagtacattatgct
ctgaattaa
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