Sesamum indicum (sesame): 105159865
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Entry
105159865 CDS
T04135
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105159865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sind03041
]
105159865
Spliceosome [BR:
sind03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
105159865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_Aladin
NBCH_WD40
PRP4
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_WDR41
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_Nup120_160
eIF2A
WD40_like
Tricorn_2nd
Motif
Other DBs
NCBI-GeneID:
105159865
NCBI-ProteinID:
XP_011075373
UniProt:
A0A6I9T0D7
LinkDB
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Position
LG4:2871277..2875254
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AA seq
572 aa
AA seq
DB search
MDIDEENTVSSSAVEPSVPLAGNETVVSSVDAISLQPVQPVIPPIIPTPVIPPIAPIPPL
PVPRPLAPLPVRPPLVRPPLQQNGGTTDSDSDQEESGSNRAAAGSTQEYEISEESRQVRE
RQEKAVQELLMKRRAAALAVPTNDNAVRARLRRLGEPITLFGEREMERRDRLRTLMAKLD
SEGQLEKLMKAHEDEEAAAKVTPSEPEEDIQYPFYTEGSQALLEARREIAKYSIVKSALR
LHRARRKRDDPDEDLDAEVDWSLKQAANLVLECSEIGDDRPLSGCSISHDGKMLATCSLS
GVTKLWSMPEVNKVSALKGHTERATDVAFSPTSYLLATASADRTARLWNVEGSVLRTFEG
HLDRLARISFHPSGKYLGTASFDKTWRLWDVETGEELLLQEGHSRSIYGISFHHDGSLAA
SCGLDSLARVWDLRSGRSILALEGHVKPVLGVSFSPNGYHLATGGEDNTCRIWDLRKRKS
LYIIPAHSNLISQVKFEPQEGYFLVTASYDMTARVWSSRDFKPVRTLSGHESKVTSLDVV
GDGQYIATVSHDRTIKLWSSREAEKDKAMEVD
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggacatagatgaggaaaatactgtctcctcctcagctgttgagccttccgttccgctt
gctggtaatgaaactgtggtttcttcagttgatgcaatctcacttcagccagttcaacct
gtaattccgccaatcattccaaccccggtcatacctcctattgccccaatacctccgctc
ccagttccaagaccattggcaccgctgcctgtccgacctccactcgtcaggcctcctcta
caacagaatggaggaactactgattctgattctgatcaggaagagtcaggttcgaaccgt
gctgctgcaggctcgactcaggaatatgagatttcagaagaaagcagacaggttagggag
aggcaggagaaagcggtgcaggaacttctgatgaagcgacgagcggctgccttggcagtt
ccgactaatgataatgctgtccgagctaggcttcgacggcttggtgaacctataactctt
tttggagagagggaaatggagagacgtgatcgactccggacgcttatggcaaaacttgat
tctgaaggccagttggaaaagctgatgaaggctcatgaggatgaagaagctgcagctaag
gtgacaccttcagaacctgaagaagatattcagtatcccttttatactgaaggttcacaa
gcattactagaagcccgtcgagagattgcaaagtattctattgtgaagtcagcattacgc
ctccatcgtgcaaggaggaaaagggatgacccagatgaggatttggatgcagaagtagat
tggtctctgaagcaggctgcaaacctggtcctagaatgcagcgagattggtgatgatcgg
cccctttcagggtgctcaatttcacatgatggaaagatgcttgccacctgttctttaagt
ggagtaaccaagttgtggagcatgcctgaagtaaacaaggtttccgcactgaaggggcat
actgaacgagctacagatgttgcgttctctcccaccagttacctattggctactgcttct
gcggacaggactgcaagactatggaatgtggaggggtcggtcctgagaacatttgagggc
catttggatcgtcttgctcggatttccttccatccatctggaaagtaccttggtacagct
agctttgacaagacttggaggttatgggatgtagagactggtgaagagttgcttctccaa
gaaggtcatagtaggagtatatatggaatatcttttcatcatgatggctccttagcagct
tcttgcggactggattctcttgctcgtgtgtgggacctgagatccggcagaagtattctt
gctctggaaggccatgtgaagcctgttcttggtgttagtttttctccgaatggttatcat
ttggctactggaggtgaagacaatacttgcaggatatgggacttgaggaagagaaaatcg
ttgtacataatacctgctcattctaaccttatttctcaagtcaaatttgaaccccaggag
ggatactttttggttacagcgtcgtatgatatgactgctagggtgtggtcttcaagagat
tttaagcctgtaaggactttatctggtcatgaatcgaaagttacatcactggatgttgtt
ggagatggacaatatattgcaactgtgtcacacgatcgaacaatcaaactatggtcgagt
agagaagccgagaaagacaaggcaatggaagttgactga
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