Sesamum indicum (sesame): 105159901
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Entry
105159901 CDS
T04135
Name
(RefSeq) protein SMG7-like
KO
K14409
protein SMG7
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105159901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105159901
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
105159901
mRNA cycle factors
Common to processing body (P body) and stress granule
105159901
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
105159901
NCBI-ProteinID:
XP_020549197
UniProt:
A0A8M8URT2
LinkDB
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Position
LG4:3217556..3222531
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AA seq
842 aa
AA seq
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MLKIRAKYGLPLGYFSDDPDNQIPMSKDGNKSSEVKKGLISCHRCLIYLGDLARYKGLYG
EGDSKARDFAAASSYYMQASSLCPSNGNPHHQLAILAGYSNDELVSIYRYFRSLAVDNPF
VTARDNLIIAFEKNRQNYTQLVGDGKATTVKTASSRMSGKGRGKGGTRSSLKDIKTEATA
VKEKVPNNLELFKAFITRFVRLNGILFTRTSLETFVEVFSMVKSDLLELLSSGPDEDLNF
GSDAAECRLAIVRMIAILIFTVHNVNKENENQSYADILQRSVLLQNAFTATFEFMGCMLE
RCNQLNDPSSSYLLPGIMVFVEWLACCPDVAVGSELEEKQVNARSFFWNKYIAFLNKLLS
KRYIFVNEHEEETCFSNMSKYDESETANRLALFEDFELRGFLPLLPAQLILDFSRKRSFG
GDGGSKEKIARVQRIIAAGKALANIVRIGQEGVYFDTKLKKFVIGPQISDDYLLTSPLEL
NLNANIENISAGVEMALGHEPNSEIGVEAEEEDEVIVFRPSINEKHMDEFSSNLNSKVLL
PSVSGAGNTDIGKENGSFSVGHDTFLFENALNASMRPSATVANATSQFLLPVQPSMSNWP
VEQSPIVNGLADLNLMENGSALKSELKDPFKVSQPTALSVPYPQFVNTSVGHNYSIQNPQ
AVVQPRFESVMSSGAAVDALPVKPSSMILPGLKKNPVSRPVRHFGPPPGFSSVPSKVMDE
PLKVDLKNDNASVPLMDDYSWLDGYPLSSLNQSVGFGDSYNQVGPAFHSLNKNNGSMGLA
SFPFPGKQVASLQVQSENQKGWQDYQLSDGEHQQQFQKVNQQPGGPPMQYQGQSLWEGRF
FV
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagataagagctaaatacggtctaccgttaggatatttttctgatgatccagat
aaccagattcccatgtcaaaagatggaaataaatcctctgaggtgaaaaaaggcctgata
tcctgtcatcgttgtttgatttatttgggagatcttgctcgttacaaaggcttgtacggg
gaaggggattctaaagcgcgggattttgctgcagcatcaagttactatatgcaagcttcc
tcactttgtccgtcaaatggcaatccacatcatcagcttgctatactggctggatattca
aatgatgaactggtctccatttatcgctattttcggagtctagcggttgataaccctttc
gttactgcgagagacaacttgataattgcatttgagaagaatcgtcagaattatacccaa
ctagttggtgatggtaaagctactacagttaagactgcatcttcaaggatgtctggaaaa
ggaagaggcaaaggtggaacaaggtcttctttgaaggacattaaaacggaagctactgca
gttaaggaaaaagttccaaataaccttgagctcttcaaagcctttattacgcgatttgtt
aggctgaacggcatcctgttcacacgcacaagcttggaaacttttgttgaagtgttctca
atggtcaaaagtgatctactagaacttctctcttctgggccagatgaggacttaaacttt
ggttcagatgctgctgagtgtagacttgcaattgtcaggatgattgccattctaatattt
acagtccataatgtgaataaggaaaatgaaaaccaatcatatgccgacattctacagcgt
tcagtcctacttcagaatgcttttactgctacctttgagtttatgggctgcatgcttgaa
aggtgtaaccagttaaatgatccctcatcgagctatttattgcctgggattatggttttt
gtagagtggttggcctgttgtcctgatgttgcagttggcagtgaactggaagagaaacaa
gtgaatgcgaggtcttttttctggaacaaatatatcgccttcctaaataagttgttgtca
aagagatatatttttgtgaatgagcatgaagaggagacatgcttctctaatatgagcaag
tacgatgagagtgagactgctaatcgccttgcattgtttgaggacttcgagttgagaggt
tttcttccccttcttcctgcccagctcatccttgatttttcaaggaagcgttcatttggt
ggtgatggaggcagcaaagaaaaaattgcccgtgtacagaggattattgcggcaggaaag
gctcttgccaacattgtccggataggccaggagggtgtatactttgacacaaagttgaag
aaatttgttattggacctcagatttctgatgattacttgctcaccagtccgttggagctg
aatttaaatgctaacatagaaaatatttcagcaggcgttgagatggctttgggtcatgaa
ccaaattcagagataggtgtggaagctgaggaggaggacgaggtgatcgtttttaggcct
tccataaatgagaagcatatggatgaattctcttcaaacttaaattccaaagtgcttctt
ccttctgtcagtggagctggcaatactgatattgggaaagaaaatgggtccttctctgtt
ggacatgatactttcctctttgagaatgcattaaatgctagcatgagaccgtcagcaact
gttgctaatgctacttctcagtttctgctgccagtccaacccagcatgtcaaattggcca
gtggaacagagtccaattgtgaatggcttggctgacttgaatttgatggaaaatggttct
gctctgaaatcagagctgaaagaccccttcaaagtttctcagcctactgctctttccgtg
ccatacccacaatttgtcaataccagtgttggccataattattccattcaaaatcctcaa
gctgtcgtgcaaccaaggtttgagtctgttatgtcctctggagcagctgttgatgccttg
cccgtgaaaccgtcatcaatgatattaccaggcttaaagaagaacccagtgagtcgacct
gtcagacactttggtccaccacctggttttagttcagttccttccaaagtaatggatgaa
ccattgaaggtggacttgaaaaatgataatgcttcagttccactgatggatgattacagc
tggctagatggatatccactgtcatcattaaatcagagtgttggttttggtgattcctat
aatcaagtgggccctgcattccattctttgaacaagaacaatggctcaatggggttagca
agcttccctttccctgggaagcaagttgcatcactgcaagttcagagtgaaaaccagaaa
ggctggcaggactatcaattatctgatggggagcatcagcagcaatttcagaaagtgaat
caacaacctggtgggcctccaatgcagtatcaaggacagtctctctgggagggtcgtttc
tttgtgtga
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