Sesamum indicum (sesame): 105160010
Help
Entry
105160010 CDS
T04135
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B isoform X2
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind04120
Ubiquitin mediated proteolysis
sind04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
105160010
04120 Ubiquitin mediated proteolysis
105160010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sind04121
]
105160010
Enzymes [BR:
sind01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105160010
Ubiquitin system [BR:
sind04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105160010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_5
FlxA
zf-RING_11
zf-RING_16
zf_RING_Vps8
Prok-RING_4
zf-RING-like
zf-HC5HC2H
MIX23
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
105160010
NCBI-ProteinID:
XP_011075556
UniProt:
A0A6I9SXJ1
LinkDB
All DBs
Position
LG4:4591665..4596269
Genome browser
AA seq
531 aa
AA seq
DB search
MMKLQSYAGLSLLATLAVIYHAFNSRGQFYPSMVYLSTSKISLVLLLNMGLVVMCILWQL
TKKIFLGSLREAEVERLNEQSWREVMEILFTITIFREDFSTTFLAMVTALLLIKALHWLA
QKRVEYIETTPSVPMLSHIRIVSFMGFLLLIDSVFLYNSIKYLVETRKASVSLFFLFEYM
ILATTTVSTFLKYIFYVSDMLMEGQWEKKAVYTFYLELVRDLIHLTLCMCFFLVIFVNYG
VPLHLIRELYETFRNFKIRVADYIRYRNITSNMNDRFPDATPEELNASDATCIICREEMT
VAKKLSCGHLFHVHCLRSWLERQNTCPTCRALVISPENGISTTASRTHGQQQGTGTTGMS
SQGSTVDGAGNNNVSQHQARLQAAASAASLYEKSFVYPSPNALMWSPGYNSLPKTFGHPA
STSMANTGGGAASGLSQQYEFANVTFAQLPQCAPLPSQFPCLNGQFDPESASDSQLGLQT
KLIKNQIEFLQNQYQLLQTQNGEKTMDLGSSDIKGKSVSSPSSSVMDSPEI
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagctgcaatcatatgctggactcagtttgttggctactttggcagtcatttat
catgcctttaatagcaggggccagttttacccttcaatggtttacctgtcgacttcaaag
atcagtttggtgcttcttttgaacatgggtctggttgttatgtgtatcttgtggcaattg
accaagaaaatctttcttggctcactccgagaagcagaagttgaaaggctgaatgagcag
tcgtggcgggaagtcatggaaatactgtttacaattactattttcagagaagatttttct
actacatttctagctatggttacagctttacttctgattaaggctttgcattggttggcc
caaaagagagttgaatacatagaaacaactccatctgttccgatgctatctcatatccgc
attgtatctttcatgggattcctcctccttattgacagtgtctttctgtataattcaatc
aagtatttggtagaaaccagaaaggcttctgtttctctattctttctattcgaatacatg
atactcgcaacgacaactgtatcaaccttcctgaagtatatattctatgtcagtgacatg
cttatggaaggccaatgggaaaagaaggctgtctacacattttacttggagcttgtccga
gatttgatccacttgactctgtgcatgtgtttcttccttgtcatttttgtgaactatggt
gtgcctcttcacttgattcgggagctgtatgagacattccgaaactttaaaatccgtgta
gctgattacatacgttaccgtaacatcacttcaaatatgaatgaccgtttcccggatgca
actcctgaagagctcaatgcaagtgatgcaacctgcattatatgtcgtgaggagatgact
gtggccaagaaacttagttgtgggcatcttttccatgtgcactgccttaggtcatggtta
gaaagacaaaatacatgccccacatgcagagcacttgttatatcacctgagaatgggata
tctactactgcatcaagaactcatggtcaacagcaaggaactggaacaactggtatgtct
tctcaaggatctactgttgatggtgcgggaaataataatgttagtcagcatcaggccaga
ctgcaagctgctgcttctgctgcctcactatatgagaagtcttttgtttatccttctcct
aatgctttgatgtggtcacctggatataactcgcttcctaaaacatttggacatcctgcc
agcacttcaatggcaaacaccggtggtggagctgcaagtggactgtcccaacagtatgag
tttgcaaatgtgacctttgctcagttgccacagtgtgctccacttccttcacagttcccg
tgccttaatgggcaattcgatccagaaagtgcatcggactctcaactgggcctacaaacg
aaattaattaagaaccagattgagttcctgcaaaaccagtaccagcttttacagacacag
aatggtgagaaaacgatggatctaggatcatctgatatcaagggaaagtcagtatcatca
ccatcttcatctgttatggactcccctgagatttag
DBGET
integrated database retrieval system
