Sesamum indicum (sesame): 105160218
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Entry
105160218 CDS
T04135
Name
(RefSeq) protein SMG9-like isoform X1
KO
K18735
protein SMG9
Organism
sind
Sesamum indicum (sesame)
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105160218
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
105160218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NB-ARC
MMR_HSR1
ABC_tran
AAA_16
RsgA_GTPase
AAA_18
MeaB
Motif
Other DBs
NCBI-GeneID:
105160218
NCBI-ProteinID:
XP_020548854
UniProt:
A0A8M8UY15
LinkDB
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Position
LG4:8276746..8280328
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AA seq
406 aa
AA seq
DB search
MAGSGGSASSNPSPAPKILLAKPGIVTSSKFNRGGGSGGPDDDSTALRSRLPSIGSLNLL
SDSWDFQIDRFLPFLTDNTEFTVVGVIGPPGVGKSTILNEIYGFDSSSPGMLPPFGMESE
ETKAMARHFTVGIEPRISSERIILLDTQPVFSPSVLAEMIRPDGSSTISVISGESLSAEL
AHEMMSIQLGVLLASVCNILIVVSEGIHDASMWRLMLTVDLLWHSFPYPSSVTLSHPPSS
TMNFDKENINKPLENGDEYIAAPIFVHTRLRDQDITPHNFLQMQKALGQCFSSSSFVRLE
GQDASKDAHSSAVALEAPNDLETNLKLFLVPSKGKDGSSRPRYESYVSALWKLRDQVLSM
SAPSFSRNVSERDWLKNSAKIWELIKDSPIIADYFRTLQSSGLYRK
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggctgggagtggtggcagcgcctcctcaaacccaagcccagctcccaaaatcttgttg
gcaaagcctggaattgtcacctccagcaaattcaatcgaggcggcggcagcggcggaccg
gacgatgattccacggcgctccgctcacgccttccatctattggttctctcaacctcctt
tcagactcttgggatttccagatcgatcgatttttaccttttttaacggataacactgag
ttcaccgtggtgggtgtaattggtccaccaggagtgggaaagtcaactattctgaacgaa
atttacgggtttgattccagttcacctggaatgctacctccttttggcatggaatcggag
gaaacaaaggcaatggctaggcactttactgtaggaattgagcctaggatttcctccgaa
aggatcatacttcttgatacccagcctgtatttagcccttcagttttagcagagatgatt
aggcctgatgggtcatccacaatctcagtaataagcggtgaatccttatctgcagagcta
gctcacgagatgatgagtatccagcttggagttctgcttgcatctgtttgtaacattctc
attgtggtctccgagggaattcatgatgctagcatgtggcgtttgatgttgacggtggat
ttgttgtggcattcctttccttatccatcttctgtaacactttctcatccaccaagttcc
actatgaactttgataaagaaaacattaataaacccctggagaacggagatgaatacatt
gctgctccgatttttgtgcatacaaggcttcgtgaccaagacattacaccacacaatttt
ctgcaaatgcagaaggcacttggacagtgttttagttcttcttcatttgtaagattagaa
ggccaagatgcatcaaaagatgctcactcttctgctgtggctcttgaagctcctaacgac
ttagagaccaacctgaaattgtttcttgttccatccaagggtaaagatggttcgtcaagg
ccacggtatgaaagctatgtctctgcgctgtggaagttaagggatcaggttttatctatg
agtgccccctctttttcaaggaatgtttccgaacgcgactggttaaagaattctgccaag
atatgggaactcattaaggattctcctattatcgctgactattttagaacactacaaagt
tctggcttatataggaagtag
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