Sesamum indicum (sesame): 105160404
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Entry
105160404 CDS
T04135
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105160404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105160404
03012 Translation factors [BR:
sind03012
]
105160404
Enzymes [BR:
sind01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105160404
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105160404
Translation factors [BR:
sind03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105160404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
nSTAND3
AAA_22
AAA_19
ATPase
Dicer_dimer
PhoH
NACHT
T2SSE
Myosin_head
Motif
Other DBs
NCBI-GeneID:
105160404
NCBI-ProteinID:
XP_011076071
UniProt:
A0A6I9T249
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All DBs
Position
LG1:complement(9620769..9634011)
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AA seq
1209 aa
AA seq
DB search
MYLLPLKFSPYSSYSKTLKPHNATPPPPPPLRLLVRMKDRPPSPYGALYVPPHHRLRSVI
TAASTTTDSKPTNVATYSDGDERRSFTSPKVNNDASSNNVSSYPYLPPHLYRKQLQQQKE
ISRHDEVAEEDSGFEFSAQPVAASSENIIAWKRKLNTLLRSADKQELVSREKKDRRDFEQ
IAALASKMGLYSHLYMKVVVVSKVPLPNYRFDLDDKRPQREVILPPGLQKRVDAYFVDYI
SGKCKSLDTLSTSSSDANIAAEESLFEEPEPLPHSKAAMEKIFWRRSVQMRNEQYTWQES
PGGRKMMDFRCSLPAYKEKDTILNAISQNQVVIISGETGCGKTTQIPQFILESEIDSMHG
ATCNIICTQPRRISAISVSERIATERGENLGETVGYKVRLEGVKGRDTHLLFCTTGILLR
RLLIDRNLKGVTHIIVDEIHERGINEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSY
FGGAPVVQIPGFTYPVRTHFLESILETTGYQLTPYNQIDDYGIEKMWKMSKQTPRKRKSQ
IVSAVEDTLSAADFKDYSALTRESLSNWNPDCLGFNLIEYLLCNICENERPGAILVFMTG
WDDITSLKDKLQAHPILGDTNLVLLLACHGSMGSEEQKLIFNKPEDGIRKIVLATNIAET
SITIDDVVFVIDCGKAKETSYDALNNTPCLLPSWISKVSAKQRRGRAGRVQPGECYHLYP
RCVFDAFAEYQLPEILRTPLQSLCLQIKSLKLGGISEFLSRALQSPEYLAVQNAIEYLKI
IGALDENENLTVLGRYLTMLPMEPKLGKMLILGVIFNCLDPILSVVAGLSVRDPFLAPMD
KKDLADAAKAQFSHDYSDHLALVRAYEGWKVADRDNAGYEYCWKNFLSAQSMKAIDSLRK
EFYSLLKDTGLVDSNPTIYNVWSYDEHLLRAIICYGLYPGICSVVHNERSFSLKTMEDGQ
VLLYSNSVNARHSRIPYPWLVFNEKIKVNSVFLRDSTAVSDSMLLLFGGSITKGDMDGHL
KMLGGYLEFYMDPALADLYQSLRRELDQLIQIKLLNPAMDIRTYHELLSAVRLLIAEDQC
GGRFVFNRQVLQPCSQSIGPTAAQKPALTFNTESGPGGDNPKSQLQTLLTRAGHATPSYK
TKQLKNNQFQATVEFNGMQLMGQPCNNKKQAEKDAAAEALQWLLGGNVVGRDYIDHISML
LKKSKKDHK
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgtacctccttccgctcaaattctctccttacagttcctactccaaaaccctaaaaccc
cataacgccaccccaccgccaccgccgccgctgcgcctactcgtcaggatgaaggaccgg
ccgccgtctccttacggcgcgctttatgtaccgccacaccatcgcctccgctctgtaatt
accgctgcctcgaccactaccgattccaagcctacaaatgtagccacttacagtgatggt
gacgaacggcgctcgtttactagcccaaaagtcaataatgatgctagtagtaataacgtt
agttcttatccttacttgcctcctcatctctatcggaagcaacttcaacagcagaaggaa
atttcacggcatgatgaggtggcggaagaagactccggattcgaattttcggcacagcct
gttgctgcttcctcggagaatattattgcatggaaacggaagttaaacactcttttgcgc
agtgcagataagcaagagttggtatcgagagaaaaaaaggatagacgtgattttgagcaa
atagcagccttagcaagcaaaatgggcttatatagccatctctatatgaaagtagttgtt
gtgagtaaagttccattacccaattaccggtttgatcttgatgacaagcgtccccagagg
gaggtgatcttgcctcctggtctgcaaaagcgcgtggatgcttattttgtggactacatt
tctgggaagtgtaagagtctggatacgctttcaacatctagtagtgatgccaatattgct
gctgaagaatccctttttgaggaaccagaaccacttccacatagtaaagctgccatggag
aaaattttctggcgtagaagtgtacaaatgcgcaatgagcagtacacttggcaggaatct
cccggaggaagaaagatgatggacttccgttgtagtctccctgcttacaaggagaaagac
acaatattaaatgccatttcacagaaccaggttgtcatcatctctggagaaactggttgt
ggcaagactacccaaattcctcaatttattttggagtctgagatagactctatgcatggg
gccacgtgcaatattatatgtactcagccaagaagaatatctgcgatatctgtatctgag
aggattgctacagagaggggggagaatctgggggaaacagttggatataaagttcggcta
gagggcgtgaaaggaagggatacccacctccttttctgcacaactggcatcttgttgcgc
agattattaattgacagaaacttaaagggtgtaacacatattatagtggatgaaattcat
gaacgtgggataaatgaagattttctgcttatcgttttgaaagatcttcttcctcgtcgt
ccagaattgcggcttattttgatgagtgcaactttagatgcagaacttttctcctcatac
tttggtggggctccagtggttcaaatcccgggttttacttatccagtacggacacatttc
ctagaaagtattttggagacaacaggataccagttgacaccttataatcaaatagacgat
tatggtatagaaaagatgtggaagatgagcaaacaaacaccaagaaagagaaaaagccaa
attgtttcagcagtggaggatacacttagtgctgctgacttcaaggattatagtgctctg
acaagggagtccttgtctaattggaaccctgattgccttggtttcaatctcatagagtat
cttctatgcaatatatgtgaaaatgaaaggccaggggctattttagttttcatgactggc
tgggatgatataacatctctgaaagataagctccaagctcatcctatactaggagataca
aatctagttttactattggcatgccatggttcaatgggcagcgaagaacagaaattgatt
tttaacaaacctgaagatggaataaggaagattgtcctggccaccaatattgctgaaacc
agcatcactattgatgatgtggtttttgtaattgactgcgggaaagcaaaagagacatca
tatgatgcgctaaataacactccttgtttgcttccttcctggatttcgaaggtttcagca
aaacaaagaagaggaagagctggacgtgttcagccaggagaatgctatcatctctatcca
agatgcgtgtttgatgctttcgcggagtatcaactacccgaaattctaaggactcctctg
cagtctctttgtttgcaaatcaagagtctgaaactcggtggtatctctgagttcctatct
agggcattgcaatcaccagagtatcttgcggtccaaaatgccattgaatacctaaaaatc
attggggctttagatgagaatgagaatttgactgttttaggacgctaccttacaatgctt
cctatggagcccaaacttgggaaaatgcttatacttggtgttatatttaattgcttggac
ccaatactaagtgtcgttgctggtctaagtgtccgtgatccttttttagctccaatggat
aagaaggatcttgcggacgcagcaaaagcacagttttcacatgattacagtgaccatctt
gctcttgtccgggcatatgagggctggaaagttgctgatagagataacgctggatatgaa
tattgctggaagaattttctgtctgcacagtctatgaaagctattgattcccttcgtaag
gagttctactctttgctgaaggacacaggtcttgttgatagcaacccaaccatttataat
gtctggagctatgatgaacatctccttcgtgcaattatttgttatgggttgtatcctgga
atttgctctgttgtgcacaatgaaagatcgttctccctgaaaacaatggaagatgggcag
gtgcttttgtactctaactcggtgaatgcacgtcactcaagaataccttatccatggctc
gttttcaatgaaaagataaaagtaaactctgtctttcttcgggattcaactgctgtgtct
gattcaatgctgctcttatttggtggaagcatcacgaaaggggatatggatggccacttg
aaaatgttgggtggatacttggagttttatatggatcctgctttagcagacctatatcag
agtttgaggagagagcttgaccaattaattcagatcaaacttctaaatcccgcaatggac
atacgcacatatcatgagcttctttcagcagtacgtctgctgatcgcagaagatcagtgt
ggtggcaggtttgtgttcaaccgtcaggtactacagccttgcagtcaatccattgggcca
acagcagcacaaaaaccagccttgacgtttaatacagaaagtggccctggaggtgataac
cctaaaagccagctgcagacgttgctgactcgggcaggccatgccacacccagctataag
actaagcagctaaagaacaatcagtttcaagcaacagtggaattcaatggtatgcagctt
atggggcagccttgcaacaacaagaagcaagcagaaaaagatgcagcagctgaggctctg
cagtggctactaggggggaatgtagtaggtcgtgattatattgaccacatatcaatgctg
ctgaaaaaaagcaagaaagatcacaaataa
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