Sesamum indicum (sesame): 105160489
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Entry
105160489 CDS
T04135
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105160489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105160489
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
105160489
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
105160489
NCBI-ProteinID:
XP_011076183
UniProt:
A0A6I9SYX1
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Position
LG4:complement(10038740..10042121)
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AA seq
200 aa
AA seq
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MVTSQVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEGILLVQEHN
HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAANSPSLQPDWQIGECVATWW
RPNFETTMYPYCPPHITKPKECKKLFLVHLSDHEYFAVPKNLKLLAVPLFELYDNVQRYG
PVISTIPQQLSRFHFNMIHP
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atggtgacatcgcaggtggtaaatacgtacccgctttcaagctacactttcggaaccaaa
gagccgaaaatggagaaagatacctccgtcgccgatcgccttgcccgcatgaaagtcaat
tacatgaaggaaggcatgaggactagcgttgaggggattttattggtacaagagcataat
catccccatattcttcttttgcaaattggaaatactttctgtaaacttccaggaggcagg
ttgaaaccaggagagaatgaaattgagggcttgaaaaggaaactctctagcaaacttgcg
gctaattcaccttctctacaaccagattggcagattggtgagtgtgtggcgacatggtgg
agaccgaattttgaaaccaccatgtacccttactgccccccacacataacaaagcctaag
gagtgcaagaaacttttccttgttcacctctctgatcatgagtattttgctgtgccaaag
aacttgaagcttcttgctgtcccattgtttgaactctacgacaatgtgcagagatatggg
cctgttatatctaccatcccgcagcagctatccaggtttcatttcaacatgatccatcca
taa
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