Sesamum indicum (sesame): 105160706
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Entry
105160706 CDS
T04135
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1
KO
K28108
shortage in chiasmata 1
Organism
sind
Sesamum indicum (sesame)
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sind03036
]
105160706
Chromosome and associated proteins [BR:
sind03036
]
Eukaryotic type
Meiosis-specific proteins
Others
105160706
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHOC1_PDDEXK_dom
SHOC1_2HhH
SHOC1_ATPase
SHOC1_HhH_tandem
Motif
Other DBs
NCBI-GeneID:
105160706
NCBI-ProteinID:
XP_020549156
UniProt:
A0A8M8UZ19
LinkDB
All DBs
Position
LG4:9996112..10008796
Genome browser
AA seq
1675 aa
AA seq
DB search
MRTRFLPTDYSTTAAGVGPLGTLDFIGLPLPLLPPRNYPSVSANFQQSFDEIPVCDISYE
VDKLTIDDALSIFLSDVLPHFVDGAGFEEPRIGSSREKTEVVPAERCTKIFYGNTELDRL
GSDSMEIEEKDGTTSNNKGGNELKFVQFEIPDMNISLLQSKNAPHSNIECSHIFSDIPEA
EFTMEPLNSELMLHDLHEIERTVYSVVDMSVEYSIEQKANLLEDADSVQGEFRSHNIGFP
LFELNAESSCVLEETYTVDELLSFENAEKQQVVQPYEAINDNKDLLGSVEFDMIKYLLHH
SVATQYLEDTNFSLKLDYVSIVELSHRQDCSTLYNGKPDGDSIWLMDPILFDEFLFIDLD
QYLLCEVVSDLSKEIEAETCESMFGKAMNFRSLSELIVCHELTLMDDSFKSLPIPLFSDH
GNTSSLHTSVEELLAQLDCQSSSASDCLYLDWHLLGEDECESAKYSSCWKMLWEIDAYDI
DAAMISSDSGKLIFDFILSEGHSNKPNAEDYKKILNLSCSDDVSLFHSSGKADISTSRNH
GDQKRRNEEILLKTGVDKVPIFGESMSSDLEFFLNPRNYVTGRGSIPADKSVHTNTACQV
FMHISDSAAAKPAQHNWSVKMHQVQLSDNILVLIDYLWRDFLALLENDKELIQMRNRFQA
SNDLTLLHLPNDKLICRLQEKVASSIYLGHNEDNIMVLALLIAIKQMAFYLCYYGIQATY
LYIDKLSTSLQCVKARLSFVYNLIRDENQKAKKELSILHPSISVLQEVLQTTLSNHNSKI
LIVSDQVFWYPLKRLLTSLKMSYNEPQHLFSSPSQRQPCCEITDAITDIMLNSDCCLVSH
EYVTASFPFSKFSFILEYGGANVSSRISSVCPKPDGLSTLCFLKVQVEESSIAEALCHGV
SMPKSIKFEMASVYFCEFSLISSSCTKRDLDSALAQKENKSKLEELLNTIPVKEVHGNEP
VEAVNEDADCSMLSLHSMPVGLASKQNLSSKPLFPDTIVIVNTRNFNEEMVISRRSTYQR
ILEMEKEGAQVVERDICLPVDLIVSSAVSLTWYDFRNIGRKASAPDEGFSCLPLCVESIA
ASTLTSLSFAFSCCILIFEGECNFLCSIMESSDELYAAAASLGIDIQLFCSYSSEMTEEI
LLSCISVSAKLSRGLYPKMSDSESLAESFLTAFASINPLSAHAILSSDAILGKFLELSNG
GKISALQKYQVPDVSIALLSAISRYGEREDSKSGMTDCSSSVSIADSGNVQFKGASKMNQ
PKHTNKLSAGELPNNLFHVGSQKLLPDDQHNLSGLYVSCNSWLSGGAEISDKLEHFSLSC
DEKLLSHIHDTDADIKLSSDKSSPYDFPSAKGLHIPDQREKPWMPPFDIDSSTRWRSVMT
PKNNLGRQSIKGTGILQENFTGEVIDVEDTQAFGENFSVENSSSFSKFLLDVQKDYAGQS
SKTSKQPHSATNLPIFRNPADIDSASGAWISRNDRRQILREETKPHYDTINRHNNSMMSQ
KGLVGGMSENAPQDSYKLSFQENSTGCIGGTPLSNALHSSQLQQGSPWTIEFLNRIRERS
RLRKQSVSHDLASPRFGSSSNTSKLTKRKSPSILEFYKYKGGNTLQKTVAQKKLKGSSRP
LNSMTDKIAPASCPSSWTPPDKRARRRLSFSTSGSGGQRKLVWRETNYHTAHRRL
NT seq
5028 nt
NT seq
+upstream
nt +downstream
nt
atgcgcacccgcttcctcccgacggactactctaccaccgccgccggtgtgggtccactc
ggaacgctagacttcatcggccttcctctgcctctccttcctcctcgaaattatccctca
gtttctgcaaattttcaacagtcctttgatgaaattccagtttgtgacatctcttatgaa
gttgacaagttaacgatcgacgatgctctctcaatattcttgtccgacgtacttcctcac
tttgtcgatggcgctggttttgaggaaccgagaatcggcagcagtcgggaaaaaactgag
gttgtacctgcggagagatgcaccaagattttctatggcaacacagaactggacaggttg
ggttctgacagtatggagattgaggagaaagatggaacaacatccaataataagggtggg
aatgaacttaaatttgtgcaatttgaaattccagatatgaatatatctttgcttcaatcg
aaaaatgctcctcattccaatatcgagtgttcacacattttctctgatattccagaagct
gaatttacaatggagccattaaattctgagcttatgctacatgatctccatgaaattgaa
cgaacagtttattcagttgttgacatgagtgtggaatactcaattgagcaaaaggctaat
ttgttggaagatgctgattctgttcagggagagtttcgttctcataacatcggatttcct
ctttttgaattgaatgccgaaagctcatgtgttcttgaagaaacatacaccgtggatgaa
cttttgagttttgaaaatgctgaaaagcagcaagtggttcaaccatatgaagcaattaat
gataacaaggatcttttgggttctgtggagtttgacatgataaagtatctattacatcat
tctgtagcaacacagtatctagaagacacaaatttttcattaaaattggactatgtaagc
attgttgaactgtcacatcgtcaagactgctcgacgctatataatgggaaaccagatggt
gattcaatttggttaatggacccaatcctatttgatgaatttttgttcattgatttggac
caatatcttctttgtgaggtggtttcagatttgtcaaaggagattgaagctgaaacatgt
gaatccatgtttggcaaagccatgaattttagaagtttgagcgaattgattgtttgccac
gaacttacccttatggatgactcgtttaaatcacttcctatacctctcttttcagatcat
ggaaatactagttcattacatacatcagttgaggagttactggcacagttggattgccag
tcttcatcagcatctgattgtttatatctagattggcatttactaggagaagatgaatgt
gaatcggctaaatattcttcttgttggaaaatgttgtgggagatagatgcttatgacatc
gatgctgcgatgatttcaagtgacagtggaaagctaatctttgattttattctctctgaa
ggtcactccaataaaccaaatgcggaagactataagaaaattctgaacttatcttgtagt
gatgatgtctctctattccattcttctggtaaagcagatataagtacctcaaggaatcat
ggagatcaaaaaagaagaaatgaagagattttactgaaaactggtgttgacaaagttcca
atatttggtgaatccatgtctagtgaccttgagttttttttgaatcccagaaactacgtt
acaggtagaggaagtatacctgcagacaagtcagttcatactaatactgcatgtcaggtc
tttatgcacattagtgattctgctgccgctaaaccagctcagcataactggagcgtcaaa
atgcatcaggtgcagctgtctgataatattctagtactgattgattatttgtggagggat
ttcttggccctgttggagaatgacaaagagttgatacagatgcgaaaccgatttcaagct
tctaatgacttgacgctactccaccttcccaacgacaagctcatatgtcgtcttcaggaa
aaggttgcatcaagtatttatttgggtcacaatgaagacaatattatggtgttagccttg
ttgattgcaattaagcagatggctttctacctttgctattatggaattcaagcaacttat
ctctatatagataagttgagtacaagtctgcagtgtgtgaaagctagattaagttttgtc
tataacctgatcagagatgagaaccagaaagctaagaaagaattgagtatcctccaccca
tccatctccgttttgcaagaagttctgcagacaacattaagcaaccataattcaaaaatt
ctaattgtttctgaccaagttttctggtatccactgaagagactattgacgtccttgaag
atgtcatataatgagccacaacatcttttcagctctccatctcagcggcagccctgttgt
gagatcacagatgctataacggatatcatgcttaactctgactgctgtttggtatctcat
gaatatgttactgcctcatttccttttagcaaattcagcttcatcttggaatatggaggc
gcaaatgtatcatccaggatatcctccgtctgcccgaagccagatgggctgtccactctt
tgtttcctcaaggtgcaagtggaggaatcaagcattgctgaagctctttgccatggtgtc
agcatgcccaagagtatcaaatttgagatggcaagtgtatatttctgtgaatttagtttg
atatctagtagttgcacaaaaagagatttggattctgcattagcccaaaaggagaacaaa
agtaagttggaagagctattaaatactatacctgtcaaggaggtccacgggaatgaacct
gtggaagctgtaaatgaagatgcagactgcagtatgttgtcccttcactccatgccagtg
ggcttggcatcaaagcaaaatctctcttccaagcccctctttccagatactattgtaatt
gtgaatacccgaaatttcaatgaagaaatggtaatttccaggagaagcacataccaaagg
attcttgaaatggagaaagaaggagcacaagttgttgaacgtgatatctgtcttcctgtt
gatctaatagttagttctgctgtttctcttacttggtatgatttcagaaatattggaagg
aaagcttcagctccagacgagggcttttcatgcttgcctctgtgtgttgaaagcattgca
gcaagtactttgacatcattgagttttgctttcagttgctgcatcctgatatttgaggga
gaatgcaatttcctatgtagcattatggaatcatcagacgaactttatgctgcagcagct
agcttaggaattgatatacagcttttttgttcatattcatctgagatgacagaagaaatt
ttattgtcctgcatcagtgtttcagctaagttgagtaggggcctctatcccaaaatgtcg
gactcagaaagcctagcagaatcttttctcactgcatttgcttcaattaatcctctctca
gctcatgcaatattgtcttcagatgccatacttggcaagtttttggaattatcaaatggg
ggcaaaatatccgctcttcaaaaatatcaagtccctgatgtaagcattgctttgctaagt
gcaataagcagatatggggagcgggaagattctaagtctggaatgacagattgctcctcc
tcagtatcaattgcagactcaggaaatgtccaattcaaaggtgcatcaaagatgaaccaa
cctaaacacacaaacaagctttctgctggtgagcttccaaacaacttgtttcatgtgggg
tcccaaaagttacttccagacgaccaacataatctttccggattgtatgtctcatgcaat
tcttggctgtcaggaggagctgagatatctgataaactggagcacttcagtttatcttgc
gatgagaagttactcagtcatattcatgatactgatgctgatataaagttgtctagtgat
aagtcaagcccttatgattttccatcggcaaaaggtcttcacatacccgatcagagagag
aagccctggatgcctccttttgacatagacagcagtacaagatggagatccgtgatgaca
ccaaagaacaaccttggcagacaaagtatcaaggggactgggattcttcaggagaatttc
acaggtgaagttatagatgtagaggacactcaagcatttggggaaaatttctctgttgaa
aattccagtagcttttcaaagtttctgcttgacgttcagaaagattatgctggacaaagt
tccaaaacgagcaaacaacctcacagtgccactaatcttcccatttttagaaatcctgct
gatattgattctgcatctggtgcctggatttctcgaaatgacaggagacaaatcttgaga
gaagaaactaaaccacattatgataccattaacagacataataattctatgatgagccaa
aaagggcttgtgggtggaatgtcagaaaatgctccacaggattcatacaaattgtctttc
caagaaaacagtactggctgcattggtggcacaccactctcgaatgctctccactctagt
cagctgcaacaaggatcaccctggacaattgaatttcttaacagaataagggaaaggagt
agattgcgtaagcagtctgtttcacatgacttagcctcccctcgttttggctcctccagt
aacacatcaaagcttactaaaaggaaaagtccctcaattcttgaattctacaagtacaaa
ggaggtaacaccttgcagaaaacagttgctcaaaaaaagctaaagggatcttcacgacca
ctaaactcaatgacagataaaatagctcctgcttcctgtccctcatcatggactccaccc
gataagagagcaagacggagactatctttctcaacaagtggaagtggagggcaacgtaag
ctggtttggagagagaccaattaccatacagcacatagaagattgtag
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