Sesamum indicum (sesame): 105161284
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Entry
105161284 CDS
T04135
Name
(RefSeq) LOW QUALITY PROTEIN: protein RDM16-like
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105161284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sind03041
]
105161284
Spliceosome [BR:
sind03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
105161284
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
105161284
NCBI-ProteinID:
XP_011077229
UniProt:
A0A6I9T536
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Position
LG4:16758461..16765492
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AA seq
802 aa
AA seq
DB search
MDKENSNRKRRESDSHRDRESCKEHHHRSKHDDDRRRSDEHHRRRSDSRTDREGSRDRDS
RRERERSHSVERKKRKERDESEERSDKRTRVYEENGREKSRFEDVKVKDDDRERKEGEGF
GSEGKSVKKDAKYESRDSGHQSKAGSVANSLATGPVSTPSSISPETFVAHTSSPATKVSS
ISKTNENKGVNINRSHEVPGKSSTDGTASDAGKTGGLSLDALAKAKRALQMQKELAERMK
KIPSLNRDAGSTREGSPQVGEKEVAKLSSSGKGIMPVPQVTASLTGTSGVTSSAPTLPIV
TSAPTIPPQSGMPHLPGLTAQKYEAVKRAQELAAKMGFRQDPEFAPLINMFPGQMAPDVT
IQPKPSKAPVLRLDALGREIDEHGNVVNVPKVNSLSTLKVNINKQKKDAFQILKPELDVD
PDQNPHFDARMGIDKNKLLRPKRMTFQFVEEGKWSREAEVIKLKSQFGEAKAKELKAKQA
QLAKAKAEPDINPNLIEVGERVITKEKPKESIPDVEWWDVPFLQSGTYGDIVDGNIHEEI
IKMEKITIYVEXXXXXPPQPLKLTKKEQKKLRTQRRLAREKDRQEMIRLGVLEPPKPKVK
MSNLMKVLGSEATQDPTKLEMEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDP
NALDTIVSVYKINDLSHPQARFKVDINAQENRLTGCAIISEGISVVIVEGGAKSIKRYGK
LMLRRIDWSAAVKKEDEEEDDDEDKPLNKCVLVWQGSVAKPSFTRFSVQECRTETAARKF
FSDHGVGHYWDLAVNFTEDDPI
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggacaaggagaattcgaaccgtaaacgaagagaatccgattcacatcgagatagagaa
tcatgtaaggagcaccatcaccgctccaagcacgatgacgaccggcgcagatctgacgaa
caccaccgccgtcggtccgactctagaactgatcgagagggaagcagggatcgagattcg
cgccgcgagcgcgagaggtctcattcggtggagagaaagaagagaaaagaaagggacgaa
agtgaggagaggagcgataagagaactagggtttatgaagagaatggaagggagaaaagt
agatttgaggatgtgaaggtcaaggacgatgatagagagaggaaagaaggtgaaggtttc
ggatcggaagggaaatctgtaaagaaggatgcgaagtatgagtcgcgtgatagtgggcat
caaagtaaggctggttccgttgccaattctcttgcaactggaccagtcagtacaccatct
agcatctcacctgagacttttgtggctcataccagttctcctgctactaaggtatcttca
atttccaagacaaatgaaaataagggagttaatattaacagatctcatgaggttcctggg
aaatccagtacagatgggacagcttccgatgctggcaagactgggggtttgtcccttgat
gctttagcaaaagctaagagagctttacaaatgcagaaggagcttgcagaaaggatgaag
aagattccttcattgaacagagatgctggctcaacaagagagggtagtccgcaagtgggt
gaaaaagaggttgctaaactttcttcctccggtaaaggtataatgccggtgcctcaagtt
actgcctcgctcactggtacctctggagtcacatcaagcgcacctactttacctattgtt
acatcagctcctacaatacccccacagagtggtatgcctcatctgcctgggctcacagca
caaaaatatgaagctgtaaaacgtgcacaggagcttgctgccaaaatgggatttcgacag
gacccagagtttgctcccctcataaatatgttccccgggcagatggccccagacgtcacc
attcaaccgaagccttcgaaagcacctgttcttcgtttggatgcactaggcagggaaatt
gatgagcatggtaatgtggttaatgttccaaaagtgaacagcttgagtaccctcaaggta
aacatcaacaagcaaaagaaagatgccttccaaattcttaaacctgaacttgatgtggat
ccggatcaaaatccccattttgatgcaaggatgggaattgataaaaataagctattgagg
cctaagcggatgactttccagtttgttgaggagggcaagtggtcaagagaggcagaagtc
attaagttgaagtctcaatttggagaagcaaaagcaaaagagctaaaggccaagcaagct
cagctggcaaaggcaaaggcggagcctgatataaacccaaatctaatagaagtaggggag
agggtgattaccaaagaaaagccaaaggaatcaattccagatgttgagtggtgggatgta
cctttcctacaatctggtacttatggtgatattgttgatggtaacatacacgaagaaata
attaagatggagaagatcaccatatatgtggaancannnnnnnnnngtccacctcaacct
ttgaagctgaccaagaaagagcagaagaaactaagaacgcagcgcagattggctagggag
aaagataggcaggagatgattagactaggtgttttagagccaccaaaacctaaagtcaaa
atgagcaacctcatgaaagttcttggttcagaagcaacccaggatcccacgaagcttgaa
atggaaataagaagtgctgcagctgagcgtgagcaagctcacattgacaggaacattgcc
cgtaagctcactccagcagagcgccgtgaaaagaaagagaggaagctctttgatgatcca
aatgcactggatactatagtctcagtttacaagattaatgatctttctcatccccaggcc
cgttttaaggttgatattaatgcccaggagaacaggcttactggatgtgcaataatttct
gaagggatcagcgttgtcatcgtcgaaggtggtgccaagtcgatcaagagatatgggaag
cttatgcttaggaggattgattggagtgctgctgttaaaaaagaagatgaagaagaagat
gatgatgaggataagccccttaacaaatgtgtgctagtttggcagggcagcgtggctaaa
ccaagctttacaagattttctgtccaggaatgcagaactgagacagctgcccgcaaattc
ttttctgatcacggggttggtcattattgggatcttgcagttaacttcaccgaggatgac
cccatctaa
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