Sesamum indicum (sesame): 105161717
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Entry
105161717 CDS
T04135
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105161717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105161717
03012 Translation factors [BR:
sind03012
]
105161717
Enzymes [BR:
sind01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105161717
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105161717
Translation factors [BR:
sind03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105161717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
T2SSE
NACHT
DUF5128
AAA_19
Motif
Other DBs
NCBI-GeneID:
105161717
NCBI-ProteinID:
XP_011077809
UniProt:
A0A6I9TAY3
LinkDB
All DBs
Position
LG5:complement(2576600..2584675)
Genome browser
AA seq
1043 aa
AA seq
DB search
MSHLLLHNPLRHYCFSPLAQFRLPLTSFVHLQFIGNRSLFKRNFCRISTSTSMSNRPNYQ
GGRRGGGGRGGGRGGGRGGGRGGGEQRWWDPVWRAERLRQKAAEIEVMDQNEWWGKMEQM
KRGGEQELIIKRNFSRDDQQILADMAYQLGLYFHAYNKGKALVVSKVPLPNYRADLDERH
GSMQKEIKMSTEIEKRVGNLLNSSNGTSSVETGSSRSSETEALQSKPVEIGRGASLLEID
TASEGLNMELKQKQEKMRETDNVKAMLEFREKLPAFKLKSEFLKAVAANQVLVVSGETGC
GKTTQLPQFILENEISSLRGASCSIICTQPRRISAISVAARISSERGEKLGETVGYQIRL
ESKRSAQTRLLFCTTGVLLRQLVQDPDLTGITHLLVDEIHERGMNEDFLLIILHDLLPRR
PDLRLILMSATINADLFSKYFGNAPTIHIPGFTFPVKEFYLENVLEKTRYNIQSEFENFR
GNSRRGRRQQESRKDPLTELFEDADIDALFKGYSTSTRRSLEAWSGSQLDLGLVESTVEY
ICRHEGSGAILVFLTGWDDISKLHDKLKVNNFLGDTNKFLVLPLHGSMPTINQREIFDRP
PPNVRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRR
GRAGRVQPGVCYRLYPKMIHDAMPQYQLPEMLRTPLQELCLHIKSLQLGAISMFLAKALQ
PPDPLSVENAIELLKTIGALDDREELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPALT
IAAALAHRDPFVLPLNRKEEADAAKRSFAGDSCSDHIALLKAFEGWKDAKRNRKDRTFCW
ENFLSPVTMQMMEDMRNQFLDLLSGIGFVDKSQGPKAYNQYSDDLEMVCAILCAGLYPNV
VQCKRRGKRTAFYTKEVGKVDIHPASVNAGVHLFPLPYMVYSEKVKTSSIYIRDSTNISD
YALLMFGGNLIPSKSGDGIEMLGGYLHFSASKTVLDLIRKLRGELDKLLSRKIEEPGLDI
TVEGKGVVAAVVELLHSQDVHYR
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaccttctacttcataaccccttgcgccattactgtttctccccactcgctcag
tttcgccttccgctcacatccttcgtgcaccttcagtttatcggcaatcggagcttgttt
aaaagaaatttttgtcggatctcgacctcaacatccatgtctaaccgccccaattatcaa
ggaggccgtcgcggcggcggaggccgcggagggggacgcggcggcggcagaggtggaggt
cgtggaggcggagagcagcgctggtgggatcctgtttggagagccgaacgtctgcggcag
aaagcggctgagattgaggtgatggaccagaatgaatggtggggaaaaatggaacaaatg
aagagaggaggggagcaggagctgatcataaagcgaaacttcagtagagatgatcagcaa
atcttggctgatatggcttatcagctgggtttatacttccatgcatataataaggggaag
gcgctggttgtgagcaaagttccattgcctaattatcgtgcagatcttgatgaaaggcat
gggtccatgcagaaagagatcaaaatgtccacggagattgagaaaagagttggaaattta
ttgaacagttccaatgggacatcatctgtcgagactggctcttctaggtcctctgagact
gaagcattacaatccaaaccagttgaaatcggcagaggggcatcgctattggagatagat
actgcatccgaaggacttaatatggaactgaaacaaaaacaggaaaagatgagggaaact
gataatgtaaaggcaatgctagaatttagagaaaagctgccagcatttaaactgaaatca
gaattcttgaaagctgtagcagcaaatcaggttcttgtagtttcaggagagactggttgt
ggtaaaactacccagcttcctcagtttatactggaaaacgagatatcatctctacgaggt
gctagttgtagtataatatgcacacaacctcgtagaatatcagctatatcagtagcagct
cgaatatcctctgaaagaggagagaagctgggtgaaactgtaggttatcagattcgttta
gaatcaaagcgctctgctcaaacaagattgctgttttgcacaactggggtgttactccgg
cagctggtgcaggacccagatttaacaggaatcactcacttgctggtagatgaaattcat
gaaagaggcatgaatgaggacttcctgctaataatattgcatgacctccttcctcgccgt
cctgacctgcgtcttatccttatgagtgccactatcaatgctgacttattctccaaatac
tttggaaatgctccaacaattcatatacctggattcacatttccagtgaaagaattttat
ttagaaaatgtcttggagaaaacacgctacaatatccaatcagagtttgagaattttcga
ggaaattcaagaagaggacggcgacagcaggagtctagaaaagatcctttgacagaatta
tttgaggatgctgacattgatgccctcttcaagggatacagcacaagcaccaggcgatct
cttgaggcttggtctggttctcagctggatttgggccttgtggaatcaacagttgagtat
atatgtcgacatgaaggtagtggagcaattcttgttttccttactggttgggatgatatt
tcaaagcttcatgataaactcaaagtaaacaatttcctcggagacacaaataagttttta
gttcttcctctccacggttcaatgcccacaatcaaccagcgggaaatttttgatcgtcca
ccgcccaatgttagaaagattgtgctagcaaccaacattgctgagagcagtattaccata
gatgacgttgtgtatgttgtagactgtggaaaggcaaaggagactagttatgatgctctt
aataagctggcttgccttttaccttcatggatttctaaggcatcagcacaccagaggcgt
ggtcgggctggtcgcgtgcaaccaggagtgtgctatagactatatcccaaaatgatccat
gatgctatgccccagtatcaactgcctgaaatgcttcgaacacctctgcaagagctatgt
ctgcatatcaagagtttgcagcttggagcaattagtatgtttttggccaaggcacttcaa
ccacctgatcctctctctgttgaaaatgccattgagcttctcaaaacaattggtgctcta
gatgatagagaagagctcactcctcttggacgacatctttgcactttgcctttggaccca
aatattggaaagatgcttctcatgggttccatcttccagtgccttaaccctgcactaaca
atagctgctgctcttgctcatcgggacccatttgtccttccactaaataggaaagaggaa
gcagatgctgcaaagagatcctttgctggtgattcgtgcagcgatcacattgcacttctt
aaagcatttgaaggatggaaagatgctaaacgaaatagaaaggatagaactttctgttgg
gagaattttctgtcaccagtaaccatgcaaatgatggaagatatgagaaatcagtttcta
gatttactgtcaggcattggttttgtagataaatcacaaggtcccaaggcatataaccaa
tacagtgatgatttggagatggtatgtgccatactttgtgctggactttacccaaatgtt
gtgcagtgcaaaagacgaggaaagcgaacagcattctacactaaagaagttgggaaagtt
gacattcatccagcttcagtcaatgctggcgttcatcttttccctcttccatacatggtc
tacagtgaaaaggtcaaaaccagtagcatatacataagagattccaccaatatatcagat
tatgctctattgatgtttggtggtaatcttattcctagcaaaagtggagatggcattgaa
atgcttggtggataccttcacttttctgcatcaaagactgtattggacttgatacggaaa
ttgcgtggagagcttgacaagcttctatcaaggaagattgaggagccaggcctggatatt
acagtggagggaaagggtgttgttgctgctgtagtcgagttgctgcacagtcaagatgtg
cattataggtga
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