Sesamum indicum (sesame): 105161994
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Entry
105161994 CDS
T04135
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105161994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105161994
03041 Spliceosome [BR:
sind03041
]
105161994
03009 Ribosome biogenesis [BR:
sind03009
]
105161994
03016 Transfer RNA biogenesis [BR:
sind03016
]
105161994
Enzymes [BR:
sind01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105161994
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105161994
Spliceosome [BR:
sind03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105161994
Complex C
U4/U6.U5 tri-SnRNP related factors
105161994
Ribosome biogenesis [BR:
sind03009
]
Eukaryotic type
Pre-60S particles
Helicases
105161994
Transfer RNA biogenesis [BR:
sind03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105161994
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
105161994
NCBI-ProteinID:
XP_011078195
UniProt:
A0A6I9TC80
LinkDB
All DBs
Position
LG5:4404288..4413000
Genome browser
AA seq
996 aa
AA seq
DB search
MDESPTSLKRKQTEVNSEAKSGITVEESVRKRQNIARTCVHEVAVPTGYASNKDESIHGT
LSDPIYNGERAKTYPFKLDPFQEVSVACLERNESILVSAHTSAGKTAVAEYAIAMAFRDK
QRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTISPNASCLVMTTEILRGMLYRGSEV
LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNLHKQ
PCHVVYTDFRPTPLQHYVFPMGGSGLYLVVDENEQFKEDNYLKLQDTFTKQNLAQGNKSG
NAKASGRIAKGGAASGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNTE
EEKDVVEQVFKNAILCLNDEDRHLPAIELMLPLLQRGIAVHHSGLLPIIKELVELLFQEG
LVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDARGI
CIIMIDEKMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFNAEHVIRNSFHQF
QYEKALPDIGKKVSQLEEEAAVLDASGEAEVAEYDKLKLEIAQHEKQMMSEMTRPERVLS
FLVPGRLVKVREGGTDWGWGVVVNVVKIPSAASGSLPAALASSRGSSYIVDTLLHCSLGS
SENGSRPKPCPPHPGEKGEMHVVPVQLPLISALSKLRLSIPSDLRPTEARQSILLAVQEL
EKRYPQGLPKLNPVKDMGIEDPEFVELANKTEELEHKLVSHPLHKSQDDHQIRSFQRKAE
VNHEIQQLKSKMRDSQLQKFRDELKNRSRVLRRLGHIDGDGVVQLKGRAACLIDTGDELL
VTELMFNGTFNDLDHHQVAALASCFIPGDRSTEQIQLRAELAKPLQQLRESAKRIAEIQR
ECKLEVNVDEYVEASIRPYLMDVIYCWSKGSSFAEVIQMTDIFEGSIIRLARRLDEFLNQ
LKAAGHAVGEVDLENKFAAASESLRRGIMFANSLYL
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggacgagtctcctacatccctgaaaaggaagcaaacggaagtgaattcagaggcgaag
tcgggaattactgtagaagaatctgtccgtaagaggcaaaacatagcacgtacatgtgtg
catgaggtggcggttccgaccggatatgcttcaaacaaggatgaatcaattcatggcacc
ctttcagatcccatttataacggggaaagagcaaaaacctatccatttaagcttgatcct
tttcaggaggtttctgtggcttgtttggaaagaaatgagtcaattttagtttcggcacac
acttcagcaggtaaaactgctgtggctgagtatgcaattgccatggccttcagagacaaa
cagagggtgatatatacttctccattaaaggctttaagcaatcagaagtatagagaatta
agccaagagttttcagacgttggcttgatgactggtgatgttacaatttcacctaatgca
agttgcttggtgatgactactgagattctcagaggaatgctttacaggggttctgaggtg
ttgaaggaagtagcttgggtcatatttgatgagatacactacatgaaggatcgcgaaagg
ggtgtcgtttgggaagaaagtattattttcttgcccccagccattaagatggtatttctt
tcagcaaccatgtcaaatgcaactgaatttgctgaatggatatgcaatttacataaacag
ccatgtcatgtggtctatacagattttaggcccacaccccttcaacattatgtgttccca
atgggtggctctggattgtatcttgtagttgatgagaatgagcagtttaaagaggacaac
tatttgaagcttcaggacactttcacaaaacaaaatcttgctcaagggaacaaaagtggg
aacgccaaggcaagtggcagaattgcgaaaggtggagctgcttctggtggttctgatata
tacaagattgtcaagatgataatggagcgaaaattccaaccagtcataatctttagtttt
agcagaagagaatgtgaacaacatgcaatgtcgatgtccaagcttgattttaatactgaa
gaggagaaggatgttgtggagcaagtatttaaaaatgcaatcctgtgtttgaatgatgag
gatagacacttgcctgccattgaattaatgttgcccttgcttcagcgaggcatcgctgtt
caccattctggcttgcttcctattatcaaagaacttgtggagcttctctttcaagaaggt
ctcgttaaggctctctttgccacagaaacgtttgccatggggttgaacatgcctgcaaaa
actgtcgttttcacaagtgtgaaaaaatgggatggtgatagtcaccgatatattggatct
ggtgagtatatacagatgagtggtagagctggacgtcgtggtaaagatgcacggggtata
tgcattataatgattgatgaaaagatggagatgaatacccttaaggacatggttttgggc
aaaccagctccattggtcagtactttcagattaagctactattcaattctgaatttaatg
agccgtgctgagggacaattcaatgctgagcatgttatcaggaactcctttcatcaattt
cagtatgagaaggctttacccgacattgggaaaaaggtctcacagcttgaagaggaagct
gcagtgcttgatgcttccggggaggccgaggttgctgaatatgataaactaaagcttgaa
atagcgcaacatgaaaagcaaatgatgtcagaaatgacaaggcctgaaagagttctctct
tttcttgtacctggtaggctggttaaggtaagggagggcggaacagactggggctgggga
gttgtagttaatgtggtgaaaataccctcagctgcatcaggttctttgcctgctgctctt
gcctcttcacgtggtagcagttatattgtggacaccctgcttcactgttctcttggctca
agtgaaaatggttctcgaccaaaaccatgtccccctcatccaggagaaaagggagaaatg
catgtggttcctgttcagttgcctctaatttctgcacttagcaagctcagattatctatt
ccttctgacttacggccaacagaagctcggcaaagtattctgcttgctgtgcaagagctt
gagaaacgctatccgcaaggcctaccaaagcttaatcctgttaaggatatgggaattgaa
gatccagagtttgttgagttggctaacaaaaccgaggaacttgaacacaaattggtttct
catccgctgcataagtctcaagatgatcatcagattagaagttttcagagaaaagcagaa
gtgaatcatgaaatccaacagctaaagtcgaaaatgcgtgattctcagcttcaaaaattc
cgtgatgaacttaaaaatcgatcacgggttctcagaaggttggggcatattgatggtgat
ggtgttgttcaattaaagggacgtgcagcctgcctgatagatactggagatgagctcctt
gtcactgaattaatgttcaatggtaccttcaatgatcttgatcaccatcaggttgcagct
ctggcaagttgtttcattcctggagacagatctactgaacaaatacagttaagagctgaa
cttgctaagccgttgcaacaacttcgagagagtgccaaaagaatagcagagatacagcgg
gagtgtaaacttgaggtaaatgtggatgaatatgtcgaagcttcaattagaccatatctg
atggatgtgatttattgttggtcaaagggttcatcctttgcagaagttatccaaatgacc
gatatttttgaaggtagcatcatacggctagcaagaaggcttgatgaatttttaaaccag
ttgaaagctgctggccatgcggtcggtgaagttgatttggagaacaagtttgcagcagcc
agtgaaagccttcgtcgtgggataatgtttgcgaactcattgtatctttaa
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