Sesamum indicum (sesame): 105162448
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Entry
105162448 CDS
T04135
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X2
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105162448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105162448
03012 Translation factors [BR:
sind03012
]
105162448
Enzymes [BR:
sind01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105162448
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105162448
Translation factors [BR:
sind03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105162448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
T2SSE
AAA_16
nSTAND3
ATPase
NPHP3_N
AAA_30
PhoH
Motif
Other DBs
NCBI-GeneID:
105162448
NCBI-ProteinID:
XP_011078760
UniProt:
A0A6I9TDM0
LinkDB
All DBs
Position
LG5:12344620..12358922
Genome browser
AA seq
1180 aa
AA seq
DB search
MPFSSMFVHNYLKLELRAMSLAHLTCPPKSFSIAKTYPRLHKLCPVRGFAFACASSSSSL
SSSSVVVRRSRNASSTSSLPRIYQQSFGYGRFAYDEYVSEAESDSDFQSSSKQLCASTLD
NVEEWRWKLTMLMRRKDEQEVVSREKKDRRDFEQLSVLATRMGLYSRQYEKVVVFSKVPL
PNYRSDLDTKRPQREVMIPMGLQRMVDSHLRAHFSRKAVNKDSFARDAFSMSNAGQSLLI
DEGFDEQEEPSTQSVIAERIRRRRSLHMRNKQLDWQESPEGQKMLEFRKSLPSYKERDTL
LNAISQHQVVVVSGETGCGKTTQLPQYILESEIEADGGAACSIICTQPRRISAMAVAERV
AAERGEKIGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGTTHVIVDEIHER
GMNEDFLLIVLKDLLPRRPELRLILMSATLNAELFSSYFGGAPMIHIPGFTYPVRSHFLE
NILEMTGYRLTPYNQIDNYGQEKMWKMQKQALRKRKTQIASAVEEALVAADFKDYSPRVR
DSLMCWNPDSIGFNLIEHVLCHICRKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSR
VLLLACHGSMPSAEQKLIFDKPEDGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYD
ALNNTPCLLPSWISKASARQRKGRAGRVQPGECYHLYPRCVHDAFADYQLPELLRTPLQS
LCLQIKSLQLGSISEFLSKALQAPEPLSVQNAIEYLKMIGALDERENLTLLGRNLSMLPV
EPKLGKMLIFGAIFNCLDPVMTIVAGLSVRDPFLMPFDKKDLAESAKAQFSARDFSDHLA
LVRAFEGWKDAERGQSGYEYCWRNFLSVQTLKAIDSLRKQFLYLLKDVGLVENIESCNGW
SRDEHLIRAVICAGLFPGICSVVNKEKSISLKTMEDGAVLLHSSSVNAQETKIPFPWIVF
NEKMKVNSVFLRDSTGVSDSVVLLFGGHISRGGLDGHMKMLSGYLEFFMKPELAATYLSM
KRELDELVQRKLLNPKLDIQCHEDLLRAVRLLVSEDQCEGRFVFGRQISTSSKKTKSSGL
ANEGGDNAKSHLQTLLGRAGHQPPSYKTNQLKNNKFRSTVVFNGLNFVGQPCGSKKEAEK
AAAAEALTWLTGERQPSEKTVEYMSAILKKSKKKQQSTAR
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgcctttctcttcaatgtttgtccacaattatttgaaattggagctcagagccatgtct
ctggcccatctaacgtgtccaccaaagtccttctccattgccaaaacatacccaaggctc
cacaagttgtgccctgtaaggggttttgcttttgcttgcgcttcttcttcttcttctttg
tcctcctcttctgttgtggtgaggcgcagtagaaatgcttcttctacgtcttctttgccg
cgtatttaccagcagagttttgggtatggaaggtttgcttacgatgagtacgtgtcggag
gcggagtctgatagtgacttccagtcttcttctaagcaattgtgtgcttcgacacttgat
aatgttgaagagtggaggtggaagttgaccatgcttatgcgccgcaaagatgagcaagag
gttgtgtcaagggagaaaaaggaccggcgtgattttgagcagctttcggtgcttgctaca
agaatgggactgtacagccgtcagtatgagaaagtagttgtgtttagtaaagtcccgttg
ccaaattatagatcagatctggataccaagcgcccccaaagggaggtgatgataccaatg
gggttgcagaggatggtagattctcatctcagggcacacttctctagaaaggctgtgaat
aaggatagctttgcgcgtgatgccttttcaatgtctaacgcgggtcagagcctgttgatt
gatgaaggatttgatgagcaagaggagccctcaacccaaagtgttattgctgagagaatt
cgtaggcggaggagcttacatatgcgcaataaacaactagattggcaagaatctccagaa
ggccagaagatgctggaatttcgaaaaagtcttccctcatataaagagcgagacacatta
ttgaatgcaatttctcagcatcaggtggtggttgtttctggtgaaactggatgtggaaaa
acaacacaactgcctcaatacatcttagagtcagaaattgaggccgatgggggagctgca
tgtagtattatctgcactcaacccagacgaatatctgctatggcagttgctgagagggtt
gctgcggagcgtggtgagaaaataggagaatctgttggttataaagttcgcctagaggga
atgaaagggagagatacacggctccttttttgtactactggaatccttttaaggagatta
ttggttgacagaaatttaaaaggcacaactcatgtcatcgttgatgagattcatgagcgt
ggaatgaatgaagattttcttctaattgtgctgaaggatcttcttcctcgtcgaccggaa
ttgagattgatcttgatgagtgcaaccttaaatgctgagcttttctcttcctattttggt
ggtgctccaatgatccacattcctggttttacataccctgttcggagtcattttctggaa
aatattctagaaatgactggctataggttgacaccatataatcaaattgataactatggt
caagagaagatgtggaaaatgcagaagcaggctctaaggaaaagaaagactcagattgct
tcagctgttgaggaagctcttgtggctgctgattttaaggactatagccctcgagttcgg
gattcactaatgtgttggaatcctgattccattggctttaatctcattgagcatgtgctc
tgtcatatttgtcgcaaagaaaggcctggtgctgtgttggtgtttatgactggttgggat
gacataaattctttgaaagatcagcttcaagctcatcctctgctgggagatccaagccga
gttctattgcttgcatgccatggttccatgcccagtgcagagcagaaattgatttttgat
aaacctgaagatggagtcaggaaaattgttcttgcgacaaatatggccgaaacaagtatt
accattaatgatgtagtgtttgtggttgattgtgggaaggctaaagagacttcatatgac
gctctaaataacactccttgtttgcttccttcctggatctcaaaggcctcagctcgccaa
aggaaaggcagagcagggcgagttcaaccaggcgagtgttaccatctgtacccgaggtgt
gtgcatgatgcatttgctgattatcaattgccagaacttctgagaacacctttacagtct
ctctgtttgcaaatcaagagtctacaactcggaagcatttcagagttcctatctaaggcc
ctacaagctcctgaacctctatcagttcagaatgctatcgagtacttaaagatgattgga
gctttagatgaacgtgaaaatcttacattgctgggacgcaacttatcaatgcttccagtt
gagccaaagcttggaaagatgcttatatttggtgctattttcaactgcttggatccagta
atgaccattgttgctggcctgagtgtcagagatccattcttgatgccatttgacaagaag
gatcttgctgagtctgcaaaggcccagttttctgctcgtgacttcagtgaccatcttgct
ctagtcagggcttttgagggttggaaagatgctgaaagggggcaatctggttatgaatac
tgttggagaaattttctttcagtgcaaactctaaaagcaattgattccctgcggaagcag
ttcctttatctgctcaaagatgttggtttagttgaaaatattgagagttgcaatggatgg
agtcgcgatgaacatctcattcgtgcagttatatgtgcgggtctgttcccagggatatgc
tctgttgtgaataaggagaagtctatatcactaaagacaatggaggatggtgcagtgctt
ttgcattcgagttctgtgaatgcccaagaaaccaaaattccattcccatggattgttttt
aatgaaaaaatgaaggttaattcagtttttctccgtgattcaactggtgtatctgattct
gtggttctgttattcggaggacacatttctagaggcggattagacggccacatgaaaatg
ctgagtggatatttggaatttttcatgaaacctgagttggctgctacatatctgagtatg
aagagagagcttgatgaacttgttcagagaaagcttttaaatccaaagttggacatacag
tgtcatgaggatcttctcagggcagtgagattgttggtctcagaggaccaatgtgaaggc
agatttgtttttgggcgtcagatctcaacatcatccaaaaaaactaaaagctcaggtctg
gctaatgaaggtggtgataatgcaaaatctcacctccaaactttgcttggtagggcaggg
catcagccaccttcctacaagacaaatcaacttaaaaacaacaaatttagatccactgtt
gtattcaatggactaaattttgttggccaaccttgtggtagcaagaaagaggcagaaaaa
gcagcagctgcagaggctcttacgtggttgactggtgagaggcaaccatctgaaaagacc
gttgagtacatgtctgcaattctgaagaaaagcaagaagaaacaacaatctactgcaaga
taa
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