Sesamum indicum (sesame): 105162452
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Entry
105162452 CDS
T04135
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105162452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105162452
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105162452
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105162452
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
105162452
NCBI-ProteinID:
XP_011078765
UniProt:
A0A6I9T8Y9
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Position
LG5:12432391..12443241
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AA seq
871 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKQIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVSELENQIDSFEAEIEGLSVKKGKTRPPRLTHLETSIARHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYSSLPLDKVES
LEDLVTIGPPGLVKGVSASSAVLSMKTSLAAAPTQAPATTAASIPQVASAHDQIDETAFQ
DDAVARTPPPKSSTLSISAPQTPAAGQASPGITSAATASPVTISTSTKEEEIANFPGRKS
SPALAETGLRAVGRGGLPSQPTSNILPSSGNTISSNGALGNIPLASEMGKRNILGSDDRS
GSSGVVQSLVSPLSNRIILPQAAKAADTLGSADTGNVNDAAIMSSRVFTSPVVPGMQWRP
GSSFQNQNEAGQFRGRTEIAPDQREKFLQRFQQVQQQGQSNLLGMPPLAGGKQYSTQQQS
VLLQQFNAQSPSISPQLGLGIGVQASGLNSVTTSASLQQQPSAIHQPSNQQTIISSTSKD
AETGFTKVEELQQQQSLTEESSVDSASNSVIGKTLMQEDELKASSYTLDSAAAAAAGALA
EPSQVMRETDLSPGQPLQSASSSGSLGVIGRRSVSDLGAIGDNISASTANSGGMHDQLYN
LQMLEAAYYRLPQPKDSERAKTYSPRHPAVTPLSYPQVQAPIVNNPAFWERLGADTYGTD
TLFFSFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDDFEQGTYVYFDF
HIANDEQHGWCQRIKTEFTFEYSYLEDDLII
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgggagcaagtaggaagttacagggcgagatcgatcgagttctgaagaaagttcaagag
ggcgtcgatgtattcgatagcatttggaacaaggtttatgacacggacaatgcaaatcag
aaggaaaaattcgaggctgacttgaagaaggagataaagaagttgcagagatatagagac
cagatcaagacatggatacagtccagcgagataaaggataagaaggttagtgcctcttat
gagcaggctctgatggatgctcgaaagcaaattgagcgtgaaatggagcgatttaagatt
tgtgaaaaagaaactaagacgaaagcattctcaaaagaaggccttggccagcaacctaaa
acagatccaaaggaaaaagctaaatcagagacacgagattggctgaataatgtggtcagc
gaactggaaaatcaaattgatagctttgaagctgaaatagagggactttctgttaaaaaa
gggaagacgaggcctcccagactgacgcatctggagacatcgattgctcggcataaggct
catattatgaagttagaattaattctaaggctgctggacaacgatgaattgagtccagag
caagtcaatgatgtcaaggatttcttggatgactatgtggaaagaaatcaggaggacttt
gacgaatttagtgatgttgatgagctttacagttctttacctctagacaaggtggaatct
cttgaagatttagttactattggtcctcctggtcttgtaaagggtgtcagtgcctccagt
gcagttttaagtatgaaaacttctttggctgcagcccccactcaggctccagcaacaacg
gcagcttccatcccacaggttgcctctgcgcacgaccaaatagatgaaacagctttccag
gatgatgcagttgcaagaaccccacctcctaaaagtagcaccctcagtatttctgcacca
caaacaccagcagcaggccaggcatctcctggcatcacaagtgctgccactgcttctccg
gtaaccatttcaacttctacaaaagaagaggagattgcgaacttccctggtcgaaaatca
tcaccagctcttgctgaaactggattaagggctgttggtagaggtggcttgcctagtcaa
ccaacttctaatatccttcctagttctggcaacacaatttccagcaatggggcccttggt
aacattcctttggcttctgaaatggggaaaagaaatattttaggttctgatgatcgatca
gggagtagtggtgtggtacagtctcttgtatcccctctaagtaatagaataatattgcca
caagccgccaaggctgctgatacacttggatcagctgatactggaaatgttaatgatgct
gcaattatgagcagcagggttttcacttctcctgtggttcctggtatgcaatggaggccc
ggaagttccttccaaaaccagaatgaagcagggcagtttcgtgggagaactgagattgct
cctgatcaaagggaaaagtttcttcagcgatttcagcaggtacagcagcaaggtcaaagt
aatcttcttggtatgcctcctcttgctggaggaaaacagtactctacacagcaacagagt
gtgctcttacagcagttcaatgctcaaagcccatctatctcacctcaacttgggttgggg
attggggtccaagcttcaggtcttaacagtgttacaacatctgcttcactgcagcagcag
ccaagtgcaatccaccaaccatctaatcagcagacaatcatatcttcaacatctaaagat
gcagaaactggatttacaaaagttgaggagttgcagcagcaacagtccctcacagaagaa
tcatcagtggattccgcttccaactccgttattggaaaaaccctcatgcaagaggatgaa
ttgaaagcttcttcttacaccttagattccgcggctgcagctgctgccggcgcacttgct
gaaccttcccaagtgatgagggaaactgacctatctccaggacaacctttgcaatcagct
tcatcttctggaagtcttggggttattggtcgaagaagtgtatctgaccttggtgctatt
ggagataacatcagtgcctcaactgcaaattcgggaggaatgcatgatcagttatacaat
ttgcagatgctcgaggctgcttattatagacttcctcaacccaaagactctgagcgtgca
aagacctattctccaagacacccagctgttacacctctgagttatcctcaagtacaagcc
cctattgtcaataatcccgccttctgggaacggctcggtgcagatacatacggcacggat
accctattcttttcattctactatcaacagaatacttaccagcaatatttggctgctaag
gaattaaaaaagcagtcctggagataccacagaaaatacaacacatggttccaacggcat
gaggaaccaaaagttgccacagatgattttgaacaggggacatatgtgtacttcgatttc
catattgccaacgatgaacagcatggctggtgtcagaggattaagactgagttcactttt
gagtacagttaccttgaagatgatttaatcatataa
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