Sesamum indicum (sesame): 105163024
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Entry
105163024 CDS
T04135
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105163024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sind03041
]
105163024
03009 Ribosome biogenesis [BR:
sind03009
]
105163024
Enzymes [BR:
sind01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105163024
Spliceosome [BR:
sind03041
]
Complex A
U2 snRNP components
U2 related factors
105163024
Complex B
105163024
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
105163024
Ribosome biogenesis [BR:
sind03009
]
Eukaryotic type
90S particles
Helicases
105163024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
nSTAND3
ABC_tran
SRP54
T2SSE
AAA_30
PhoH
Flavi_DEAD
AAA_7
AAA_29
NACHT
TsaE
Motif
Other DBs
NCBI-GeneID:
105163024
NCBI-ProteinID:
XP_011079527
UniProt:
A0A6I9T6C3
LinkDB
All DBs
Position
LG6:complement(285470..290616)
Genome browser
AA seq
727 aa
AA seq
DB search
MGTERKRKVSLFDVVDETAVSGKMSRANGGGTATAAVASTINRWNGRPYSQRYYEILEKR
KSLPVWHQKEEFLQALRTNQTLILVGETGSGKTTQIPQFVLDAVEIETADKRRKFMVGCT
QPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLL
ERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMK
VPGRLHPVEIFYTQEPERDYLEAAIKTVYQIHACEPPGDILVFLTGEEEIEDACKKLAKE
IANAGDQVGPAKIVPLYSTLPPAMQQKIFEPAPPPAVEGGPPGRKIVVSTNIAETSLTID
GIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFH
NDLAPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDD
DGNLTKLGEIMSEFPLDPQMAKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAAD
EAKARFGHIDGDHLTLLNVYHAYKQNKEDPQWCYENFINHRALKSADNVRQQLARIMARF
NLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKP
EWVIYNEYVLTSRNFIRTVTDIRGEWLVDVAPHYYDLSNFPNCEAKRQLEKLYKKRENAR
EESRNKK
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgggaacggagaggaagaggaaggtgagcctgtttgatgtagtggacgagacggctgtt
tccgggaagatgtccagagccaacggcgggggaacggccactgccgcggtcgcttcgacg
attaacaggtggaatggaaggccttattcccagaggtattatgagattttagagaagagg
aagtctctccctgtctggcaccagaaagaggagtttttgcaggcgcttagaaccaatcag
accctaattcttgtcggtgaaactggtagtggtaaaaccactcagattccccagttcgta
ctggatgctgtagagatagagactgcagataaacgtaggaagttcatggttggatgtaca
cagcctcgcagggtggctgcaatgtctgtttcaaggagggttgctgaagagatggatgtg
acaattggagaggaagtaggttatagtatacgtttcgaggattgtagcagtgcacggact
gtattaaagtacttaacagatggtatgcttttaagagaagccatgacagatccattgctg
gagagatataaagtgataattcttgatgaggctcatgagagaactttggcaacagatgtt
ctatttgggcttctgaaggaagtgttgaaaaacagacctgacctgaaactagtagttatg
agtgccactctagaggctgaaaagtttcaaggctacttttttggtgcaccactcatgaaa
gttcctggaaggcttcatccagtcgagatcttttatacccaggagcctgagagggattac
ctcgaagctgctataaagactgtatatcagatacatgcgtgtgaacctcctggtgatata
cttgttttcctgaccggtgaagaggaaatcgaagatgcatgtaaaaaattagctaaggaa
atagctaatgctggggatcaagtaggaccagctaaaatagtgccactgtattcaacactt
cctccagcaatgcagcagaagatttttgaacccgctccacctccggctgtggaaggtggt
cctccaggaagaaagattgttgtttctacaaatattgctgaaacctctttgacaattgat
ggcatagtttatgtcatagaccctgggtttgcaaaacaaaaagtctacaatccacgaatt
cgtgttgagtctctgttggtttctcctatatcaaaggctagtgcccatcaacggtcagga
cgtgctggaagaacgcagcctggaaaatgtttcaggctctacactgaaaagagtttccac
aatgaccttgcaccgcagacctatccagagatattaaggtcaaaccttgcgaacactgtt
ctaactttgaaaaaactggggatagatgatctggtgcattttgattttatggatccacct
gctccggagactctgatgagagcattggaggttctgaattacttaggagccctcgatgat
gatgggaacttgaccaagttgggtgaaatcatgagtgagtttcccttggatcctcagatg
gcgaaaatgctggttgtcagtccagaatttaattgttccaacgagatcctctctatatct
gctatgctttcagtacccaattgctttgtccggcctagggaggctcaaaaagctgcagat
gaagcaaaagctcgttttgggcacatcgacggagatcatctcacgctgttgaatgtgtat
catgcttacaaacaaaataaggaagatccacagtggtgctatgagaattttatcaatcat
agagcactgaagtctgcagacaatgtcagacagcagctagctcgcattatggccagattc
aatttgaagctatgcagtacagactttaacagccgtgattactatgtgaatatcaggaag
gctatgctggctggatactttatgcaggttgcccatttagagcggactgggcactatcta
actgtgaaagacaaccaagttgttcacttacatccttcaaattgcctggaccataagccg
gagtgggttatctacaatgaatatgtcctaacaagcaggaacttcattcgtacagtaacg
gatattcgtggcgaatggttggttgatgtcgcaccgcattactatgacctttccaacttt
cccaattgtgaagcaaagcgccaactagagaaactgtataagaagcgggagaatgcgagg
gaagagagcaggaataagaaatga
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integrated database retrieval system
