Sesamum indicum (sesame): 105163460
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Entry
105163460 CDS
T04135
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
sind
Sesamum indicum (sesame)
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sind03041
]
105163460
Spliceosome [BR:
sind03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
105163460
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_MalT
UTP6_C
NRDE-2
TPR_12
Motif
Other DBs
NCBI-GeneID:
105163460
NCBI-ProteinID:
XP_011080112
UniProt:
A0A6I9THE4
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Position
LG6:2742290..2751519
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AA seq
831 aa
AA seq
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MGDSETVMEQTPYSNASVTAASDAGGSAAQATNTVGPVSATVSSTGVVVSSDGSMNTDDS
AAHGSDIGAGNAYGTAVNSVQHENPIVMAYDANENPAGPANSSLDSAQVAGYDSSLNGNG
VSEAGAGATAGISENGVTPADGIGSGLHQPVDGSGLSAEEERLWSIVTANSLDFNAWTAL
IEETERMSEGNISKIQKVYDTFLAEFPLCYGYWKKYADHEARLSSVDKVAEVYERAVQGV
TYSVDMWLHYCVFAIGTYGDPDTIRRLFERALAYVGTDYLCFPLWDKYIEYEISQQDWPR
VATIYTRVLEIPNQQLDRYFEGFKELVASRPLSELRTAEEAAVAAGANTEAAGQENEGEV
PPTGPEQSSKAVSASLKDAEELEKYIAIREEIYKKAKDFDSKIIGFETAIRRPYFHVRPL
NAAELENWHNYLDFIEGGGDFNKVVNVYERCLVACANYPEYWIRYILCMEASGSMELAEN
ALARATQVFVKRQPEIHLFAARFKEQHGDISGARAAYQLVHTGISPGLLEAIIKHANMEN
RLGNLDDACSLYEQAISIEKGKEQSQTLPLLFAQYSRFVFLVSGNADKAREILVQGAESA
QMSKPLLEAMIHLESIQSLPKQIEYLDSLVEKFIVPNPENPSIASVEEREELSSIFLEFL
DLFGNAQSIKKADDRHAKLFLHHKSTAESRKRHSEDYLVSDRTKLAKSLSSTSAPSVMGA
YPSTQNQWAAGYGVQPQAWPQASQAQAQQWTPGYAQQAAYGAYGSYGTGYTHPQVPTSVP
QTAAAYGTYPPTYPAQAFPQQAYAQPTAAATLTPAQQPAAAPPATYYSSYY
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacagtgagaccgtgatggaacaaacaccttacagcaatgcgagtgtaaccgct
gcttctgatgctggtgggtctgctgctcaggccactaatacggttggtcctgtttctgcc
actgtatctagtacaggagtggtagtttcttctgatggaagtatgaatacagatgattcg
gcggctcatggttctgatattggtgctggaaatgcctacggcacagcagtaaattccgtc
cagcatgaaaaccctattgtaatggcatatgatgctaatgaaaatcctgctggtcctgca
aactcttctctggattcagctcaagttgctggttatgattcttcattgaatggtaatggt
gttagtgaagcaggggccggagcaacagctggtattagtgaaaatggggtcactccagct
gatggtattggatctggtctgcatcaacctgtggatggatctggccttagcgcagaagaa
gaaagattgtggagtatagtgacggctaattctttggatttcaatgcctggactgcatta
attgaagaaacagagagaatgtcagagggtaacatttcaaaaattcaaaaagtctatgat
acctttttagccgaatttcctctatgctatggttactggaagaagtatgctgatcatgag
gcgcgcctcagctcagtggataaagttgcagaggtttatgaacgagctgttcaaggagtt
acctactctgtggacatgtggttgcattattgtgtttttgctattggaacatatggagat
cctgacaccatcagaaggttatttgaaagagcattagcgtatgttgggactgattactta
tgctttccactttgggacaaatacattgagtatgaaatttcgcaacaagattggcctcgt
gttgccacaatttacacaagggtattggaaattccaaatcagcagctggatcgttatttc
gaaggatttaaagaattggttgctagtaggcctctgtctgagttgcgaacagctgaagaa
gctgctgttgcagctggtgcaaatactgaagctgctggtcaagaaaatgagggagaggtt
cctcctactggtccggaacaatcttctaaggctgtaagtgcaagcttaaaagatgctgag
gagttggagaagtatatcgccattagagaagagatatataagaaagctaaagacttcgat
tctaagatcattggttttgaaacagctattaggaggccatactttcatgtgcggcccctc
aatgctgcagaacttgaaaattggcataactatcttgattttattgaaggtggtggtgac
ttcaataaggttgttaacgtctatgaaagatgtctagtagcttgcgccaattaccctgaa
tactggatacgatatattttgtgcatggaagctagtggcagcatggagctcgctgaaaat
gcacttgctagagctactcaagtctttgtgaagaggcaaccagagatccatctttttgct
gctcgatttaaggagcagcatggtgacatttctggagcccgagctgcttatcaacttgtg
cacactggtatttcacctggtcttctcgaagcaatcatcaagcatgcgaacatggaaaac
cgacttggaaacctggatgatgcatgttccttatatgagcaggcaatttcaattgaaaaa
ggaaaggagcagtcacagactttgcctttgttgttcgctcaatactcacgttttgtgttc
ttggtttctggcaatgctgataaggcaagggagattcttgttcaaggtgcggagagtgcg
caaatgtcaaagcccctattggaggcaatgatccacttagagtcaattcagtcgcttccg
aagcaaatagaatatttagattccttggttgaaaaattcatcgttcctaatcccgaaaac
cctagtatcgcaagtgttgaagaaagagaggaactatcaagcattttcttggagttcttg
gatctctttggaaatgcacaatccataaaaaaggctgatgatcgacatgcaaaactgttc
ttgcaccacaaaagcacagcagagtcaaggaagcgtcattcagaggattatttagtctca
gacagaacgaaacttgcaaaatcacttagttcaacatctgctccttcggtgatgggtgca
tatcccagtactcaaaatcagtgggcggcaggttatggtgtacaacctcaagcttggcct
caggcctcgcaggctcaggcacaacaatggaccccaggctatgcacaacaggctgcatat
ggtgcatatggtagttatggaacgggttacactcatccacaagtacccacatctgtgccc
caaactgctgctgcatatggaacttatcctccgacttatccagcacaggcttttccccag
caggcgtatgcacagccaacagcagctgcaactttgaccccagcccagcagcctgctgca
gctcctcctgctacatattactccagttactactga
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