Sesamum indicum (sesame): 105163489
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Entry
105163489 CDS
T04135
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03082
ATP-dependent chromatin remodeling
sind03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105163489
03083 Polycomb repressive complex
105163489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sind03036
]
105163489
Chromosome and associated proteins [BR:
sind03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
105163489
Histone modification proteins
HAT complexes
HATB complex
105163489
HDAC complexes
Sin3A-HDAC complex
105163489
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
105163489
PRC2.2
105163489
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
105163489
Heterochromatin formation proteins
Other heterochromatin formation proteins
105163489
Chromatin remodeling factors
NuRD complex
105163489
NuRF complex
105163489
NuRF complex (fruit fly)
105163489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML
EIF3I
Beta-prop_WDR75_1st
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF12
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_IFT122_1st
Beta-prop_HPS5
Beta-prop_SPT8
ANAPC4_WD40
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
105163489
NCBI-ProteinID:
XP_020553090
UniProt:
A0A8M8V9C9
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All DBs
Position
LG1:11614204..11621625
Genome browser
AA seq
457 aa
AA seq
DB search
MKDKPAERAVEERYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQVEQATYKNRQRLYLS
EQTDGSVPNTLVIANVEVVKSRVAAAEHIAQFNEESRSPFVKKSKTIIHPGEVNRIRELP
QNSNIVATHTDSPDVLIWDVESQSNRQPVLGATPSRPDLVLTGHQDNAEFALAMCPTEPF
VLSGGKDKSVVLWSIHDHISSLAADQGAQKSPGSKGGAVNGKPADGSTVQARGVFQGHED
TVEDVQFNPSSAQEFCSVGDDSCLILWDARTGLSPVVKVEKAHNADLHCVDWNPNDVNLI
LTGSADNSVRMYDRRNLTSGGVGSPVHIFEGHTAAVLCVQWSPAKASVFGSAAEDGLLNI
WDHGKIGKVENYSGAGNSIYPPGLFFRHAGHRDKVVDFHWNAADPWTIVSVSEDGEKTGG
GGTLQIWRMIDLIYRPEEEVVAELDKFKSHLLTCSSS
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacaagccagcagagcgcgcagtggaggagcgctacacacaatggaagtcgcta
gtgccagtgctctacgactggcttgccaatcacaacctcgtttggccttccctctcttgc
aggtggggaccacaagtggagcaagcaacttacaagaatcgccagcgtctatacctttct
gaacagacggatggcagtgttccaaatacacttgtcatagcaaatgttgaagttgtcaag
agtagggtggcagcagcagagcacatagcacagttcaatgaagaatcacgttcgcctttc
gtgaagaagagcaagaccatcatacatcctggcgaggtgaatcgaatcagggaacttccg
caaaatagcaacattgtggccactcacactgacagtcctgatgtcctcatctgggatgtt
gagagtcaatctaatcgccaacctgttttaggtgccacaccatctcggcctgatctggta
ctaactggacatcaagacaatgctgaatttgcactagccatgtgtcctacagaacccttt
gtgctctctggaggcaaggacaagtctgtggttttgtggagcatccacgaccatatatca
tctttggcagcagatcagggagctcaaaagtcaccaggatctaagggtggtgcagtcaat
ggcaaacctgcagatggctccactgttcaagctcgaggggttttccaggggcatgaggat
actgttgaagatgtccagtttaacccatcaagcgcacaggagttctgtagtgttggtgat
gattcttgccttatactgtgggatgcaagaactggcttgtcccctgttgttaaggttgag
aaggctcataatgctgatcttcattgtgttgattggaatccgaatgatgtgaatctaatt
ttgacaggatctgccgataattccgttcgcatgtatgaccgtcgaaatcttacttctggg
ggagttggatcccctgttcacatatttgaagggcatactgctgctgtgctgtgcgttcag
tggtcaccagctaaagcatctgtattcggcagtgctgcagaggatggtctcttgaatatc
tgggatcacggaaagattggcaaggtggagaattattctggagcaggaaattcaatttat
cccccaggcttattcttccgacatgctgggcatagggataaagtggtcgactttcactgg
aatgcggccgatccatggacaatcgttagtgtgtctgaagatggagaaaagactggtggg
ggaggtaccctacagatatggcgaatgatcgacctgatttaccggccagaagaggaggtg
gtggctgagctcgacaagttcaagtcccatctgctgacatgctcttcttcttga
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