Sesamum indicum (sesame): 105163640
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Entry
105163640 CDS
T04135
Name
(RefSeq) RNA-binding protein 8A
KO
K12876
RNA-binding protein 8A
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03013
Nucleocytoplasmic transport
sind03015
mRNA surveillance pathway
sind03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105163640
09122 Translation
03013 Nucleocytoplasmic transport
105163640
03015 mRNA surveillance pathway
105163640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105163640
03041 Spliceosome [BR:
sind03041
]
105163640
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105163640
Spliceosome [BR:
sind03041
]
Complex C
Other components
EJC/TREX
105163640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
Motif
Other DBs
NCBI-GeneID:
105163640
NCBI-ProteinID:
XP_011080365
UniProt:
A0A6I9TCK5
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Position
LG6:complement(4045622..4049308)
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AA seq
199 aa
AA seq
DB search
MANAEVEAVDFEPEDDDLMDDDVGDGSPNRTSASIPRLKSAIAGGGSYSEPRKTKGRGFR
DEAAAKADRNARMSARFDSLVTEGGPGPVRSIEGWIILVAGVHEEAQEDDLHNAFGEFGE
IKNLHLNLDRRTGFVKGYALIEFEKFDEAQRAINEMDGTELLTQTLNVDWAFSKGPFRRR
SMRKRSPRGHRSRSPRRRF
NT seq
600 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgcggaggtagaggcagttgatttcgagcctgaggacgatgatctcatggat
gacgacgttggagacggctcccccaacagaacctccgcctccattcctcgcctcaaatca
gccattgccggtggcggttcctactcggagccaaggaagaccaaaggtcgtggattccgc
gacgaggcggctgctaaggctgaccgtaatgctcgcatgtctgcccgctttgactccctc
gttacggagggtggtcctggccccgtacgatctattgaaggatggattattctggttgct
ggagttcatgaagaggcacaagaggatgatttacataatgcatttggtgagtttggggag
ataaagaatttgcacttgaatcttgaccgacgcactggatttgttaagggctatgcgcta
attgagtttgagaagtttgatgaggcccagagagctataaatgaaatggatggaactgaa
ctgctcactcagaccctaaatgttgattgggcattcagcaaaggcccattcaggaggaga
agtatgaggaaaagatcacctcgtggtcatcgttctaggagtccaaggaggagattttga
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