Sesamum indicum (sesame): 105163818
Help
Entry
105163818 CDS
T04135
Name
(RefSeq) uncharacterized protein LOC105163818
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105163818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105163818
03400 DNA repair and recombination proteins [BR:
sind03400
]
105163818
Enzymes [BR:
sind01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
105163818
Messenger RNA biogenesis [BR:
sind03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
105163818
DNA repair and recombination proteins [BR:
sind03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
105163818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HTH_40
RecQ_Zn_bind
HRDC
ResIII
Cas3-like_C_2
Cmr7A
Utp25_C
Motif
Other DBs
NCBI-GeneID:
105163818
NCBI-ProteinID:
XP_011080608
UniProt:
A0A6I9TIK4
LinkDB
All DBs
Position
LG6:complement(5358663..5368735)
Genome browser
AA seq
921 aa
AA seq
DB search
MESSLKEYFGFSKFRPYQKEIVENILQGKDCLVVMATGSGKSLCYQVPPLIAQKTAVVVS
PLISLMQDQVMVLKQRGIRAEYLSSAQTDRNVHTNAESGQFDILYMTPEKACMLTASFWS
RLLESGICLFAVDEAHCISEWGHNFRVEYKQLDKLRDVLSNIPFVALTATATEKVRGDII
NSLKLQNPHVTIGSFDRKNLFYSVVSFDRSNTFLNELVSEISACIQKAGSTIIYCTTVKD
VEQIFEYLKAAGIEAGMYHGQMSNKAREDCHRAFIRDEFYVMVATIAFGMGIDKPNIRHV
IHYGCPKSLESYYQESGRCGRDGIPSFCRLYFTRSDFTKADFYCADARTADQRKAIMESF
MAAQRYCMLTTCRRNFLLGYFGEKTSSVNCGTCDNCTNSKQESDMSREAFLLMACIQSCQ
GHWGLNLPVDVLRGSKSKKVLDGKFDKLPFHGLGKDKPANWWKALAYQLISQDYLVETFR
DIYKTVRVGPRGMQFLNSCNPDHQPPLYLTLTPELAVDDTNKGTVGEGVVNGFAQLEFDG
LSQAEDRLYKLLVEERMKLARDHGTAPYALCGDQTLRRITLIRPSTRARLANIDGVNQYF
LKTYGDHLLQIIQRLSQELGLSLDGEPKAEPPMPANVATVPNNKRLTPAKLEAWKMWQEE
GLTVQRIANYPGRAAPIKEQTVFEYILEAGREGCPIDWLRLCLEIGLTQEIFKDIQGAIS
KVGKEKLKPIKNELPEEVSYSQIKLCMLMQDMGISTGVISSTHQQGRKADESRTPQISEG
SGLSCQTEGSQSNLELLVDNVDYEMKVVGVPDDTSLGKSVDKAPSLLIEGVDAKQPVAAT
DELTCSRKRQKLNVPRAQHSIAVEPTEGSVLSWLKNFNDGVTLSDLLEHFKGSKEEAVID
LLKHLEGEFLIFRKNNLYKLM
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atggagtcatctctcaaggaatattttgggttctcgaaattccggccgtaccagaaagag
atagtggaaaatattttgcaaggaaaagattgcttagtggttatggcaactggcagtggc
aagtccttgtgctatcaggtgccaccattgattgcgcaaaagactgctgtagtcgtaagc
ccactgatatccttaatgcaggatcaggtgatggtattgaagcaaaggggtataagagcc
gagtatctttccagtgctcagactgatcgtaatgtgcacaccaatgctgaaagtggtcaa
tttgatattttgtatatgacgccagagaaagcctgcatgctcactgccagtttctggtca
agattactagagtccggaatttgcctatttgctgtcgatgaagcgcattgtatatcagag
tggggtcacaatttcagggtcgaatacaagcaattagacaaactccgtgatgttctttca
aacattccatttgttgcgttaacagcaactgctactgaaaaggttcgtggtgacattata
aattcactgaagctgcaaaatcctcatgtaaccattggctcattcgaccgcaagaatctc
ttttacagtgttgtatcctttgaccgaagtaatacttttctgaatgagcttgtgtcagaa
atctctgcatgcattcagaaagcaggctcaactataatatactgtacaactgtcaaggac
gttgaacagatttttgagtaccttaaggcagcaggtattgaggctggaatgtaccatggc
caaatgtctaataaggcgcgggaggactgccacagagcatttatcagagatgagttttat
gtcatggttgcaactatagcttttggcatgggtattgacaaacctaatataagacatgtg
atacattatggctgcccaaagagtttggaatcatattaccaggaaagtggacgttgtggt
agagatggaattccctccttctgccggctatattttacgagaagtgacttcacaaaggct
gatttttattgtgctgatgcacgaacggcagaccaaagaaaagcgataatggagtcattc
atggctgcacaacgctattgtatgcttacaacttgcagaagaaattttctgttagggtac
tttggggagaaaacctcatctgttaactgtggaacatgcgataattgcaccaactcaaag
caagagagtgacatgtctagagaagcatttcttctcatggcttgcattcagtcatgccag
ggtcactggggactcaatttgcctgtcgatgtcctccgtggatctaagtcaaagaaagtt
cttgatggtaaatttgataagcttccattccatggcctggggaaagataagccagctaat
tggtggaaggcactagcttatcagttaatttcacaagattatttggtcgagaccttcaga
gatatttataaaactgtaagagttggaccaagagggatgcaatttttgaattcctgcaat
cctgatcatcagcctccattatatctgacattgactccagaattggcggttgatgacaca
aacaaaggcacagttggtgaaggagttgtcaatggttttgctcagctggaatttgatgga
ttatcccaggctgaggatcggctctataaattgcttgtggaagagagaatgaaacttgca
agagaccatgggactgctccgtatgcgctatgtggtgatcaaacattgagaaggataaca
ttgataaggccttctacaagagcaaggctagcaaatattgatggtgtaaaccagtacttt
ctgaaaacatacggagatcatttactacaaatcattcagcgtctatcacaagaattgggt
ctttctttggatggggagccaaaagcagaacctccaatgccagccaatgttgccactgta
cccaacaacaaaagactaacacctgccaagttggaagcttggaaaatgtggcaagaagag
ggcctcactgtccaaagaattgctaattatccaggtcgtgcagctccaataaaagaacaa
actgtcttcgagtatattcttgaagccggaagagagggatgcccaattgattggctaaga
ctatgtctggagattggactgacacaggagatatttaaagacattcagggtgctatatca
aaagttgggaaagagaagttaaaacctataaaaaatgaattacctgaagaggtaagctac
agccagataaaactctgcatgctgatgcaagatatgggaatatcaaccggagttatttca
tctacccatcagcaaggccgcaaagcagatgaatccaggacgccacaaatctctgaagga
tcgggactttcatgccagacagaaggatctcagtccaatctcgagttacttgttgacaat
gtagattatgagatgaaagttgttggtgtgcctgatgatacttcactagggaaatcagtg
gacaaagctcccagtctcctgatagagggtgtggatgccaaacagccagtagctgctact
gatgaattgacctgttctaggaaacgccaaaagctcaacgtaccacgagcacaacactcc
attgctgtggagccaactgagggttctgtactgagttggcttaagaacttcaacgatggc
gttacgctatctgatctcttggagcatttcaagggatcaaaagaggaggcagtgatcgat
ctgctaaagcatctggagggtgagtttctgatatttagaaagaacaatctttataaactc
atgtaa
DBGET
integrated database retrieval system
