Sesamum indicum (sesame): 105164140
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Entry
105164140 CDS
T04135
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105164140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105164140
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105164140
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105164140
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
105164140
NCBI-ProteinID:
XP_011081022
UniProt:
A0A6I9TE21
LinkDB
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Position
LG6:8748373..8756472
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AA seq
556 aa
AA seq
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MSGILSSGLNGSNSNLPDNTGRAFATSFSAQSGSSGAVLNQSGGNIQGLHNIHGNFNMSN
MPGPYASRNSANLAGLPNGVQQAPGSVSNGRYTINSLPNALSQLSLGSSHGHSGVTNTGG
PGVLTNIGNSGRITNSIGGLVGGGNTSRGASSAGVANIPGLASRLNLTAPQVVSILGNSY
SGAGVPLSQNQFQAGNNNFSFMALLNDSNAHDNATFDVNDFPQLSGRPPSAGGSHGQIGL
MQKHNIGFGQQNQEFSIQNEDFPALPGYKGGLNVGGSAEYTVNAHQKEQIHDSMANLMQS
QQLSMGRSSGFNFGGSYSSHHPQQHRASSINGTGVSYLTSGNQDLHFHGPEQYQQFQQSQ
SRFINPFRDKEMKSTQGSQSVPDQYGMLGLLSIIKMVNPALTSLALGIDLTTLGLNLNSS
ETLHKKFASPWSDEPVRGEPEYSVPECYYAKQTPPLKQTYFARFRPETLFYIFYSMPKDE
AQLFAANELCNRGWFYHRELRLWFTRVKNMEPLVKTNTYERGCYFCFDPNTWQTARKDNF
VLHYEMVEKRPALPQQ
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggatactcagttcaggattgaacggatcgaattcaaaccttccagataacact
ggaagagcttttgcaacttccttttctgctcagtctggttcctccggcgctgttctaaat
caatctggtggaaacattcaagggcttcacaacatccatggtaacttcaacatgtcaaac
atgccgggcccatatgcatcaagaaattcggcgaatcttgctggtcttcctaatggtgtc
caacaagctccaggaagtgtgtctaatgggagatacactataaatagtcttcctaatgca
ctttctcagctctctcttggaagttcacatggacattcaggtgttacaaatactgggggc
cccggcgtgcttacaaatattggaaattcagggcgaataacaaattctataggtggtctt
gtgggtgggggcaatacttcaagaggtgcgagttctgctggggttgcaaacatccctggt
cttgcttctcgcttgaacttgactgctccgcaggttgtatctattctaggcaattcatat
tccggtgctggtgtgcctctctcccaaaaccaatttcaagctgggaataataactttagt
ttcatggcattgctaaatgactcgaatgcccatgataatgctacctttgatgtaaatgac
tttccccagctatctgggcgccctccttcggctggtggctctcatggtcaaataggtttg
atgcaaaaacataacattggtttcggccaacagaaccaagaattcagcattcagaatgaa
gatttccctgctttgccgggatataaaggtgggcttaacgttggaggtagtgctgaatat
actgtaaacgcacaccaaaaagaacaaattcatgacagtatggcaaatttaatgcagtcc
cagcaactatctatgggacgatcttctggttttaattttgggggctcatattcatcacat
catcctcagcaacatcgtgcttcgtcaataaatggcactggggtttcctatctaacatca
ggcaatcaagatcttcatttccatggtcctgagcagtaccagcaattccagcagtcgcaa
tctcgtttcatcaatccattcagagataaagagatgaaatcgactcagggatcccagagt
gtgcctgatcaatatgggatgcttggtttattgagcatcataaaaatggtcaatccagca
ttaacctctcttgctctgggaattgatctgaccactcttggtctgaatttaaattcatct
gagacacttcacaagaagtttgcatctccctggtctgatgaacctgtcagaggagagcca
gagtacagtgttcctgagtgttattatgctaaacaaactcctccattgaagcaaacttac
tttgcaagattccggccagaaacactgttttatatcttttacagcatgccaaaagatgag
gcgcaactctttgcagcaaatgaactttgcaatcgaggatggttctatcacagagaactc
cgcttgtggttcaccagggtgaagaatatggaacctcttgtcaagacaaacacttacgag
agaggttgctacttctgtttcgatcccaacacctggcagactgcaagaaaggataacttc
gtcctgcattatgaaatggtcgagaaaagacccgctctccctcagcagtag
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