Sesamum indicum (sesame): 105164585
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Entry
105164585 CDS
T04135
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03013
Nucleocytoplasmic transport
sind03015
mRNA surveillance pathway
sind03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105164585
09122 Translation
03013 Nucleocytoplasmic transport
105164585
03015 mRNA surveillance pathway
105164585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105164585
03041 Spliceosome [BR:
sind03041
]
105164585
Enzymes [BR:
sind01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105164585
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105164585
Spliceosome [BR:
sind03041
]
Complex C
Other components
EJC/TREX
105164585
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105164585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
105164585
NCBI-ProteinID:
XP_011081570
UniProt:
A0A6I9TAC5
LinkDB
All DBs
Position
LG6:15989925..15995260
Genome browser
AA seq
428 aa
AA seq
DB search
MGETKDNDAYEEELLDYEEEDEKAPDSVGAKVNGEAVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYIPEIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILA
LARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgagacgaaggacaacgatgcatacgaagaggagcttctggactacgaggaagaa
gacgaaaaagccccggactctgtcggtgccaaagtaaacggcgaggcagtcaagaagggt
tatgttgggatccatagttcaggattcagggacttcctcttgaagccagagcttttacgg
gctattgtggactctggatttgaacatccatcagaagttcaacatgagtgcataccacaa
gcaatattgggaatggatgttatctgccaagcaaaatctggcatggggaaaactgctgtg
tttgttctttcaacattacagcaaattgaacccgttgctggtcaggttgctgctctggtt
ctatgccatacaagggaactagcgtaccagatatgtcatgaatttgaaaggttcagcaca
tatataccagaaatcaaagttgctgttttctacggtggtgtcaacatcaagatccacaaa
gaccttctaaagaatgaatgtcctcacattgttgttggaacacctggaaggatacttgct
ctggcaagagacaaggacctttctctgaggaatgtgaggcatttcattttggacgagtgt
gataagatgctcgaatctcttgatatgcgaagagatgttcaggagattttcaagatgacc
cctcatgacaagcaagttatgatgttttcggctactctcagcaaggagattcgaccagtt
tgcaagaaattcatgcaagatcctatggaaatttacgtggacgacgaggccaagttgacc
cttcatggtcttgtacagcactacatcaaattgactgagttggagaaaaaccggaagctg
aatgacctgctcgatgcattggatttcaatcaagtggtcatatttgtcaaaagtgtcaat
agagctgctgagctgaacaagttgcttgtggagtgtaattttccttctatttgcatccac
tctggcatgtcccaagaagaaagattaactcggtacaagggattcaaggaggggcataag
aggattctagtagcaacggacttggttggtagaggaattgacatagaacgggtgaacatt
gtgatcaactatgatatgcctgattctgcagacacttacctgcacagggttggaagagct
ggaaggtttggcaccaaagggcttgccatcacatttgtttcctctgcatctgattcagat
gttcttaaccaggttcaggagaggtttgaagttgatattaaagagcttcctgagcagatt
gatacatccacatacatgccatcttag
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