Sesamum indicum (sesame): 105165279
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Entry
105165279 CDS
T04135
Name
(RefSeq) sm-like protein LSM2 isoform X1
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03018
RNA degradation
sind03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105165279
09123 Folding, sorting and degradation
03018 RNA degradation
105165279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105165279
03041 Spliceosome [BR:
sind03041
]
105165279
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105165279
mRNA degradation factors
5'-3' decay
Lsm complex
105165279
Spliceosome [BR:
sind03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
105165279
Complex C
U2 snRNP components
105165279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Gemin7
Motif
Other DBs
NCBI-GeneID:
105165279
NCBI-ProteinID:
XP_020550374
UniProt:
A0A8M8V232
LinkDB
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Position
LG6:20762671..20765767
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AA seq
102 aa
AA seq
DB search
MLSCMEMCVQLFLSVFKDLVGSEVTVELKDDLAVRGTLHAVDQFLNFKLVNVRVVDPDKH
PHMFSVQNCFIRGSAVRYVQLPPNEVDVELLQDATRREARSS
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atgttgagttgcatggagatgtgtgtacagttgttcctctcggttttcaaggatttagtg
ggtagtgaagtgacggtggaattgaaggacgatttagcggtgagaggaactctgcatgcg
gtggatcagtttcttaacttcaagcttgtaaacgtcagggtcgttgatccagataagcat
cctcatatgttttctgtacagaattgcttcatcaggggatctgcagtcaggtacgtccag
ttgccacctaatgaagttgatgtagaacttcttcaagatgccaccagaagagaagctcga
agcagctaa
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