KEGG   Sesamum indicum (sesame): 105165279
Entry
105165279         CDS       T04135                                 
Name
(RefSeq) sm-like protein LSM2 isoform X1
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
sind  Sesamum indicum (sesame)
Pathway
sind03018  RNA degradation
sind03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sind00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105165279
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105165279
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sind03019]
    105165279
   03041 Spliceosome [BR:sind03041]
    105165279
Messenger RNA biogenesis [BR:sind03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     105165279
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     105165279
Spliceosome [BR:sind03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    105165279
 Complex C
  U2 snRNP components
    105165279
SSDB
Motif
Pfam: LSM SM-ATX Gemin7
Other DBs
NCBI-GeneID: 105165279
NCBI-ProteinID: XP_020550374
UniProt: A0A8M8V232
LinkDB
Position
LG6:20762671..20765767
AA seq 102 aa
MLSCMEMCVQLFLSVFKDLVGSEVTVELKDDLAVRGTLHAVDQFLNFKLVNVRVVDPDKH
PHMFSVQNCFIRGSAVRYVQLPPNEVDVELLQDATRREARSS
NT seq 309 nt   +upstreamnt  +downstreamnt
atgttgagttgcatggagatgtgtgtacagttgttcctctcggttttcaaggatttagtg
ggtagtgaagtgacggtggaattgaaggacgatttagcggtgagaggaactctgcatgcg
gtggatcagtttcttaacttcaagcttgtaaacgtcagggtcgttgatccagataagcat
cctcatatgttttctgtacagaattgcttcatcaggggatctgcagtcaggtacgtccag
ttgccacctaatgaagttgatgtagaacttcttcaagatgccaccagaagagaagctcga
agcagctaa

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