Sesamum indicum (sesame): 105165609
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Entry
105165609 CDS
T04135
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105165609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sind03021
]
105165609
03036 Chromosome and associated proteins [BR:
sind03036
]
105165609
Transcription machinery [BR:
sind03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
105165609
Coactivators
SAGA/TFTC/STAGA complex
105165609
Chromosome and associated proteins [BR:
sind03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
105165609
STAGA complex
105165609
TFTC complex
105165609
SAGA complex
105165609
SLIK complex
105165609
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_IFT122_1st
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WD40_Gbeta
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
DSE1_N
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_VPS8
Beta-prop_RIG_2nd
CFAP251_N
Beta-prop_WDR41
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
ASA1
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_EIPR1
PAC11
Beta-prop_NOL10_N
Beta-prop_DCAF4
Ge1_WD40
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Tricorn_2nd
Beta-prop_DCAF12
Cytochrom_D1
PALB2_WD40
WD_LRWD1
Beta-prop_ACSF4
Beta-prop_RIG_1st
LisH
Motif
Other DBs
NCBI-GeneID:
105165609
NCBI-ProteinID:
XP_020552157
UniProt:
A0A8M8V0I4
LinkDB
All DBs
Position
LG1:complement(12992409..13003402)
Genome browser
AA seq
671 aa
AA seq
DB search
MDQEEIDKVVLAYLDKRGFKQAGLAFQQEKQQHSKGSNSSSTAQIDPDIAKQILAFSETD
GPTQYQEGYSKLRSWAYNSLDQYQHELVRVLYPVFIHAFMDLVAKGHIQEARAFFNSFRG
DHEVGHSRDLQKLEGVLSPSHLEEMEFAHSLRQSKVRIKICQYSYDLLLQYLHKSQSITM
LGIINEHINFQVSPGQPISIADDAEFVTLFGGDQDAVNLINQKEIHWGLLEDSLEEKLEK
TGGSNTDLEKGDGETREGELEDSKKRSVDGGKQGTSLKKQKKEKVVSATAKASRPDSVTA
SGAPRVKPELALPVIPIEVEQSILEDLRNRVQLSSMALPSISFYTFINTHSSLNCASISH
DGSMVAGGFSDSALKVWDMAKLGQQNGNSPLQGENELASNDHTLGPNAGGRSYTLFRGHA
GPVHSATFSPFGDFLLSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASA
SHDRTARIWSVDRVQPLRVMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVR
IFIGHRSMILCLAMSPDGRYMASGDEDGTIMMWDLATGRCVSPLVGHSSCIWSLAFSCEG
SLLASGSADCTVKLWDVTTSSKVPKTEENKSGSASRLRSLKTLPTKSTPVYALQFSRRNL
LFAAGALTKQS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaccaagaagaaatcgacaaggtggtgttggcgtatttggataaaaggggttttaag
caagcggggctcgcttttcagcaagagaagcagcagcacagcaaaggcagtaactcttct
tcaactgcacaaattgaccctgatattgccaagcaaatcctcgccttttctgaaacggat
ggtcctacacagtaccaagaagggtatagcaaacttcggtcatgggcttataactcactt
gatcaataccagcacgagttggttcgggtgttgtatccagtatttatccatgcatttatg
gatcttgttgcaaagggtcatattcaggaagctagagctttctttaatagcttccgggga
gaccatgaagtgggtcattcccgtgatctccaaaaactagaaggtgttctttctccctca
catctggaggaaatggaatttgcacattccctcaggcagagcaaagtgcgcattaagatt
tgccaatattcttatgacctacttctgcaatacttacacaagtctcagtcaattacaatg
cttggaataatcaatgagcacatcaattttcaagtgtctcccggacaaccaatctcaatt
gctgatgatgcggaatttgtcacgcttttcggaggtgaccaggatgcagttaatttgata
aatcagaaagaaattcattgggggttgcttgaagattctttggaagaaaaattggaaaaa
actgggggttcaaatacagatttagaaaagggcgatggagaaacgagagaaggagaactg
gaagacagtaagaaaagatctgttgatggtggcaagcaaggcacatcacttaaaaagcaa
aaaaaggagaaagttgtcagtgctacagcaaaagcttctcgtccagacagcgtcacagca
tctggagcaccacgtgtcaaaccagaactagccttgccagtaataccgatagaggtggaa
cagtctattcttgaagacttgagaaaccgtgtgcagttgagtagcatggcattgccttcc
atcagcttctacacctttatcaatacacatagcagcttgaattgtgcttcaatatctcat
gacgggtcaatggtagctggtggattttcagactcagcattaaaggtttgggatatggca
aagcttgggcaacaaaatgggaactctcctttgcagggtgaaaatgagttggcttccaat
gaccatacgcttggcccaaatgcagggggaagatcttacacattattccgaggtcatgct
ggacctgttcattctgctacttttagtccatttggggattttcttctatcttcttcatca
gattctacaattcgattgtggagcacaaagttaaatgcaaatcttgtttgctacaagggt
cacaattatcctgtatgggatgtacagtttagtccagtgggacactattttgctagtgct
tcacacgatcggacagcaaggatctggtctgtggacagagtacagcctttaagagtaatg
gctggtcatttatctgatgtagattgtgtacaatggcatgcaaactgcaactatattgcc
accggatccagtgacaaaacagtacgcttatgggacgttcagagtggggagtgtgttaga
attttcattggtcatagaagtatgatcttatgcttggcaatgtcacctgatggtcgttat
atggcatctggtgatgaagatggtacaataatgatgtgggatcttgcaactggtcgctgt
gtttcccctttggttggccacagctcttgcatatggtcacttgctttcagctgtgaaggt
tcacttctggcttctggttcagcggattgcactgtgaaattatgggatgtaaccacaagc
tcgaaggtgccaaaaacagaagagaacaaaagtggaagcgcaagcagacttagatcattg
aagaccttacctaccaaatcaactcctgtctatgctctgcagttctctagacggaacctt
ttatttgcagctggtgcactcacaaagcagtcataa
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