Sesamum indicum (sesame): 105165609
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Entry
105165609 CDS
T04135
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105165609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sind03021
]
105165609
03036 Chromosome and associated proteins [BR:
sind03036
]
105165609
Transcription machinery [BR:
sind03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
105165609
Coactivators
SAGA/TFTC/STAGA complex
105165609
Chromosome and associated proteins [BR:
sind03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
105165609
STAGA complex
105165609
TFTC complex
105165609
SAGA complex
105165609
SLIK complex
105165609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
Ge1_WD40
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
WD40_like
Beta-prop_DCAF12
Cytochrom_D1
PALB2_WD40
WD_LRWD1
Beta-prop_RIG_1st
LisH
Motif
Other DBs
NCBI-GeneID:
105165609
NCBI-ProteinID:
XP_020552157
UniProt:
A0A8M8V0I4
LinkDB
All DBs
Position
LG1:complement(12992409..13003402)
Genome browser
AA seq
671 aa
AA seq
DB search
MDQEEIDKVVLAYLDKRGFKQAGLAFQQEKQQHSKGSNSSSTAQIDPDIAKQILAFSETD
GPTQYQEGYSKLRSWAYNSLDQYQHELVRVLYPVFIHAFMDLVAKGHIQEARAFFNSFRG
DHEVGHSRDLQKLEGVLSPSHLEEMEFAHSLRQSKVRIKICQYSYDLLLQYLHKSQSITM
LGIINEHINFQVSPGQPISIADDAEFVTLFGGDQDAVNLINQKEIHWGLLEDSLEEKLEK
TGGSNTDLEKGDGETREGELEDSKKRSVDGGKQGTSLKKQKKEKVVSATAKASRPDSVTA
SGAPRVKPELALPVIPIEVEQSILEDLRNRVQLSSMALPSISFYTFINTHSSLNCASISH
DGSMVAGGFSDSALKVWDMAKLGQQNGNSPLQGENELASNDHTLGPNAGGRSYTLFRGHA
GPVHSATFSPFGDFLLSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASA
SHDRTARIWSVDRVQPLRVMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVR
IFIGHRSMILCLAMSPDGRYMASGDEDGTIMMWDLATGRCVSPLVGHSSCIWSLAFSCEG
SLLASGSADCTVKLWDVTTSSKVPKTEENKSGSASRLRSLKTLPTKSTPVYALQFSRRNL
LFAAGALTKQS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaccaagaagaaatcgacaaggtggtgttggcgtatttggataaaaggggttttaag
caagcggggctcgcttttcagcaagagaagcagcagcacagcaaaggcagtaactcttct
tcaactgcacaaattgaccctgatattgccaagcaaatcctcgccttttctgaaacggat
ggtcctacacagtaccaagaagggtatagcaaacttcggtcatgggcttataactcactt
gatcaataccagcacgagttggttcgggtgttgtatccagtatttatccatgcatttatg
gatcttgttgcaaagggtcatattcaggaagctagagctttctttaatagcttccgggga
gaccatgaagtgggtcattcccgtgatctccaaaaactagaaggtgttctttctccctca
catctggaggaaatggaatttgcacattccctcaggcagagcaaagtgcgcattaagatt
tgccaatattcttatgacctacttctgcaatacttacacaagtctcagtcaattacaatg
cttggaataatcaatgagcacatcaattttcaagtgtctcccggacaaccaatctcaatt
gctgatgatgcggaatttgtcacgcttttcggaggtgaccaggatgcagttaatttgata
aatcagaaagaaattcattgggggttgcttgaagattctttggaagaaaaattggaaaaa
actgggggttcaaatacagatttagaaaagggcgatggagaaacgagagaaggagaactg
gaagacagtaagaaaagatctgttgatggtggcaagcaaggcacatcacttaaaaagcaa
aaaaaggagaaagttgtcagtgctacagcaaaagcttctcgtccagacagcgtcacagca
tctggagcaccacgtgtcaaaccagaactagccttgccagtaataccgatagaggtggaa
cagtctattcttgaagacttgagaaaccgtgtgcagttgagtagcatggcattgccttcc
atcagcttctacacctttatcaatacacatagcagcttgaattgtgcttcaatatctcat
gacgggtcaatggtagctggtggattttcagactcagcattaaaggtttgggatatggca
aagcttgggcaacaaaatgggaactctcctttgcagggtgaaaatgagttggcttccaat
gaccatacgcttggcccaaatgcagggggaagatcttacacattattccgaggtcatgct
ggacctgttcattctgctacttttagtccatttggggattttcttctatcttcttcatca
gattctacaattcgattgtggagcacaaagttaaatgcaaatcttgtttgctacaagggt
cacaattatcctgtatgggatgtacagtttagtccagtgggacactattttgctagtgct
tcacacgatcggacagcaaggatctggtctgtggacagagtacagcctttaagagtaatg
gctggtcatttatctgatgtagattgtgtacaatggcatgcaaactgcaactatattgcc
accggatccagtgacaaaacagtacgcttatgggacgttcagagtggggagtgtgttaga
attttcattggtcatagaagtatgatcttatgcttggcaatgtcacctgatggtcgttat
atggcatctggtgatgaagatggtacaataatgatgtgggatcttgcaactggtcgctgt
gtttcccctttggttggccacagctcttgcatatggtcacttgctttcagctgtgaaggt
tcacttctggcttctggttcagcggattgcactgtgaaattatgggatgtaaccacaagc
tcgaaggtgccaaaaacagaagagaacaaaagtggaagcgcaagcagacttagatcattg
aagaccttacctaccaaatcaactcctgtctatgctctgcagttctctagacggaacctt
ttatttgcagctggtgcactcacaaagcagtcataa
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