Sesamum indicum (sesame): 105166457
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Entry
105166457 CDS
T04135
Name
(RefSeq) CCR4-NOT transcription complex subunit 10
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105166457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105166457
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105166457
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_14
TPR_2
TPR_12
ARM_TT21
TPR_1
TPR_8
BAAT_C
DUF3379
TPR_10
Motif
Other DBs
NCBI-GeneID:
105166457
NCBI-ProteinID:
XP_011084121
UniProt:
A0A6I9TGJ5
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Position
LG7:6869330..6878680
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AA seq
857 aa
AA seq
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MDSASSSLPFVTRDGPPSVVAGEDDSALLVAAGLAKEAALLFQAGKFVDCLRILNQLLEK
KEGDPKIRHNIAIVESCQDGCSDPRRLIEALENIKKQSEELAHTSGEQLEVASNNGSKHT
ASMRGSNAVGHPSSSVVYTDEFDTSVAMFNIAVIWYHLHEYAKSFSYLDMLYQSIEPIGE
GTALRICLLLLDVALLSDNASRFSDVISYMEKVFCVNSLTNQVDNGTSTQQQSLLASKSA
SFPSNSTVPDSSYSDSVVTGNSSDNSLTRSLSEEALEDESMQLLSSLDISGQNLQRPVIA
PNDLPRTQAEESLSAADLRLKLHLYKVRFLLLTRNLKAAKREVKMAMNIARGKDYPMALY
LKSQLEYARGNHRKAIKLLMASSISTELGISSMYYNNLGCIYYQLGKHHTSGVFFSKALR
NSSFVRKEKPRKLLNLSQDKSLLISYNCGIHSLACGRPFHAARCFQTASLIFYNQPILWL
RIAECCLMALEKGLIKSISSTSDKLDIKVNVIGKGKWRQLGLRYGGSPTGQGEYVGKDSS
FTADDKQPDLSMSLARQCLVNALYLLDSVEANYMRSGLHPSSEERESRETPPSQSTNHKN
MAVGDPKASNVVSSVPSQVNSNGEVKEQKGGNNQSGSLQNSITEYEHIRMKENQMMKQTA
LADLAYVELALGNPLKALSAAKSLIKLPDCSKIYIFLGTMYAAEALCLLNKPNEAGEYLM
MYVSGGNNIELPYSQEDCEKWRVEKVVDGDELNGGTTVPSAVSLADESQGSMFLSPVEAR
GMFCANYAANFALLGDLERAHHFVIKALSDIPNSSQAILTAIYVDLKRGKTQDALSKLKQ
HTGIRFLPGSLTVNGSS
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggattcagcgtcgtcgtcattgccatttgttactagagatgggccgccgtcggtcgtg
gcgggggaggacgacagtgctcttttggttgctgcggggcttgctaaggaggctgctttg
ctctttcaggctgggaagttcgtggactgtttgagaattttgaatcagttattggagaag
aaagagggtgatccaaagattcgccataatatagccattgtggagagctgccaagatgga
tgctcagatcctaggaggcttattgaagcactggaaaacatcaagaaacaaagtgaagag
cttgctcatacatctggggaacagttagaggttgcaagcaacaatggaagcaaacataca
gccagcatgaggggaagcaatgctgtgggacatcctagttcttctgttgtttacactgac
gagtttgacacttcggtggcaatgttcaacatagctgtcatctggtatcatcttcatgaa
tatgcaaaatcattctcatatttggacatgttgtatcagagcattgaacctattggcgag
ggaacagcccttcgtatatgccttttgttgctggatgttgctttactttccgataacgca
tcaagattttctgatgtaataagctacatggagaaggttttttgtgtcaatagcttgacc
aatcaagtagataatggaacctcaacacagcagcaatctttattagcttcaaaatctgcg
tcatttcctagcaattcaaccgtccctgattcttcttactctgattcagttgttactgga
aattcttctgataattctttaaccagatctttgtcggaggaagcacttgaagatgaatca
atgcagttactttcgtctcttgatatcagtggacagaaccttcaaagacctgtcattgca
cctaatgatcttcccaggacccaagcagaggagtccctgtcagctgctgatttgaggctt
aagctacatctttacaaggttcgttttctgctcctcaccaggaaccttaaagcagccaag
cgcgaagttaagatggctatgaacatagctcgtggaaaagattatcccatggctctttat
ttgaagtcacagcttgaatatgctcgtgggaaccatcgcaaagcaatcaagcttttgatg
gcatcaagtattagcacagagttggggatctctagcatgtactataacaatcttgggtgc
atctactaccaacttgggaagcatcacacttcaggtgtatttttctctaaagccctaaga
aatagctcgtttgtgcggaaggagaaacctcggaaactcctaaatttgtcgcaggataaa
tcccttctaatatcatataactgtggtatacattcattggcctgtgggagaccttttcat
gctgctcgctgttttcagacggcaagccttatcttttacaaccaacctattctgtggctg
cgaattgctgagtgctgtctaatggccttggaaaaagggctgataaagtctatttcatct
acatctgacaagcttgatatcaaagtcaatgttattggaaaaggaaagtggaggcagctt
ggtctgagatatgggggttcacccactggtcagggggaatatgttggaaaagacagttca
tttacagctgatgacaaacagcctgatctctcaatgtctctagcccggcagtgtcttgtc
aatgctctgtatttgttggactctgtggaggcaaattatatgagatctggcttacatcct
agttctgaagaaagagagtcacgagaaacaccaccatctcagagtacaaaccacaagaat
atggctgttggggatcccaaggcatctaatgtagtttcttctgttcccagtcaagttaat
tcaaacggtgaagtgaaagaacagaagggtggaaacaatcagagtgggtcgttacaaaac
tctatcactgagtacgaacatattcgtatgaaggagaaccagatgatgaagcaaaccgca
cttgctgatttggcgtatgttgagttggcacttggaaatcccttgaaagccctatcagca
gcaaagtctttaatcaaacttccggattgctctaagatatatatatttttgggaacaatg
tatgcggcagaagccttatgcctgctgaataagccaaacgaagctggtgaatatttgatg
atgtacgtttctggtggtaacaatattgagcttccgtatagccaagaggactgtgaaaag
tggagagtcgaaaaagtggtagatggtgatgagttaaatggtgggacaacagttcccagt
gctgtctcattggccgatgaatcccaaggatctatgtttctgagtcctgtagaggctcgt
ggaatgttttgtgcgaactatgctgctaactttgcattgctaggagaccttgagcgggct
caccactttgtgatcaaagcattatccgatatacctaatagctcccaagccattcttact
gcaatttatgtggatctaaagcgtggtaagacacaagatgctctttctaagctgaaacaa
catactggcattagatttctccctggcagtttaacagtgaatggatcttcttga
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