Sesamum indicum (sesame): 105166532
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Entry
105166532 CDS
T04135
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03440
Homologous recombination
sind03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
105166532
03450 Non-homologous end-joining
105166532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sind03032
]
105166532
03400 DNA repair and recombination proteins [BR:
sind03400
]
105166532
DNA replication proteins [BR:
sind03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
105166532
DNA repair and recombination proteins [BR:
sind03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
105166532
BRCA1-C complex
105166532
NHEJ (non-homologous end-joining)
MRX complex
105166532
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
Rad50_zn_hook
AAA_29
Tropomyosin
ABC_tran
AAA
AAA_16
Motif
Other DBs
NCBI-GeneID:
105166532
NCBI-ProteinID:
XP_011084217
UniProt:
A0A6I9TSF8
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Position
LG7:7561655..7589894
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKVACTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTATRKDVVCIRSFQLTQKATKMEYKAIESVLQTI
NPQTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQGQEIKAYKLKMEHLQTLKDAAFKLRQSIVQDQEKTETLNS
QIQELDIKIQDMDREINQTELVLKDLQKLQSQIATKSGERKSKFEELQKRYAALAEENED
TDEELNEWKSKFDERIAILESKISKLLREKADIEDKSRVLADVIGKNTTEIAKLQASAEA
HMTVKNERDLNIKSLFQKHNLGPLPSGPFSDEVALDLTQQIQSKLKDLNKDLQEKKKSNE
VELKATFDHYMHANDRWKEIEAQKEAKAEMKAGILKRIQDKEIERDSFEGQIADVDVAML
DERERNLQVEVERKANQLSMREFDLTIRQKRREIFTMGQEIEALSQERDAMNADSHDRVV
LSLKKAELENHKKKHRRIVEECKERIRGVLKGRLPPDKDLKDEIIKVQSSLQKEYDDLDK
KADEARNEVTTLKLKIQEVNNNLSKFHKDLESSKRFVESKLRSVDQQSGGIDSYLKVLEI
AKEKRDVQKSKYNIADGMRQMFDPFERVARAHHICPCCERTFSANEEDEFVKKQRVKATS
SAEHMKVLAVDCSNADFNFQQLDKLRVVYEEYVKIGKESIPLAEKNLTQLNEELDQKNQA
LDDVLGVLAQIKAEKDSVDALIPPVETADRLFQEIQALQRQVGALECKLDVQGQGAKSLE
DIQSELKMLEKTKSTLIDEADKLRVEQMSLDKELTTLQLRWNSVREEKIKVANVLSNIKR
AEEELDRLSEEKSQVQLDLKHLEEALGPLSKEKKKLLDDYNNLKVKLNHEYELQADHYRE
YQQEVDTLLNMFSTIKEYDNLNKGEKLKALQEKQALSETELRSCQNRMNELLTELDKSRD
LSRNQAELRRNIEENLEYRKLKAQVDQLTREIESLEESVLKIGGVSKIEALLLKLSQERE
SLLTELNRCRGTLSVYKSNIDRNRVDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDKYY
KALDKALMRFHTLKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLAAALL
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRITKDDYQHSIIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgttgataaaatgttgataaagggcatccggagcttcgacccggaaaacaag
aatgtcatcaccttcttcaagcctttgactctcatcgtaggccccaacggcgctggaaaa
acgactataattgagtgcttgaaagtagcctgcacaggtgaactacctccaaatgcacgg
tctggtcacagcttcattcatgatcctaaggtggcaggagagacagagacaaaggggcag
ataaagctgaggtttaagacagcaacaagaaaggatgtggtctgcataaggtcatttcag
ctcacccaaaaggctaccaagatggagtacaaggcaattgagtctgtactccagacaata
aatccccaaactggagagaaagtttgcctaagctaccgatgtgctgatatggaccgagaa
attcctgcgttgatgggggtatctaaggctattctggagaatgttatatttgttcatcag
gatgaggcaaactggccgttgcaagatccatcaacgttgaaaaagaagtttgatgatatc
ttctctgcaactaggtatacaaaggcattagaggttatcaagaagcttcacaaggatcag
ggacaggagataaaggcatacaagctgaaaatggagcatttacagacactgaaagatgct
gcttttaagctccggcaaagcattgtgcaagatcaagaaaaaacagaaacattaaactcc
caaatccaggagcttgacataaaaattcaggatatggacagggagattaatcaaactgaa
ttggtgttgaaagacctacagaaattacaaagtcagatagctacaaagtcgggggaaaga
aaatccaagtttgaggaactgcagaagcgttatgcagcacttgctgaggaaaatgaagac
actgatgaagaactcaatgagtggaaatccaagtttgatgaaaggattgcaattctagaa
tccaaaattagcaagttgttgagggaaaaggcagatatagaggataaaagtcgagttctt
gcagatgtgattggaaaaaatacaacggaaattgccaaacttcaagcttctgcagaagct
catatgaccgtgaagaatgaaagggacttgaacattaaaagcttatttcaaaagcacaat
ttaggtcctcttccaagtggcccctttagtgatgaagttgctttagaccttacccaacaa
attcaatcaaagttgaaggaccttaacaaggacttgcaagaaaagaagaaatcaaacgaa
gtggaacttaaggcaacatttgatcactacatgcatgcaaatgaccgatggaaagaaatt
gaggcccagaaggaggctaaggcagaaatgaaggctggcattttaaaacgtattcaagat
aaggagattgaacgtgattcatttgaaggtcagattgctgacgttgatgttgctatgctt
gacgagagagaaaggaacctgcaagttgaggtggaaaggaaagctaatcaactttctatg
agggaatttgatttgactataaggcaaaagcggcgcgaaatatttacaatgggtcaagaa
atcgaggctcttagtcaggaaagagatgccatgaatgctgattcccatgacagggttgtg
ctctctcttaaaaaagcagagttggaaaaccataaaaagaaacatagaagaatagtggag
gaatgcaaggagcggattaggggggtgctgaagggtaggcttccgcctgacaaggacttg
aaggatgaaattatcaaggtccaaagttctctccaaaaagaatatgatgacttagacaaa
aaggctgatgaagccaggaatgaagtgactacactgaagttgaaaatacaagaagtcaac
aataatttgtccaaattccacaaagatctggaatcaagcaagagatttgttgaatctaaa
cttcggtcagtggaccagcagtctggtggtatcgactcctatctcaaagtcttagagatt
gctaaagaaaagagagatgtgcagaaaagtaaatataacattgctgatggcatgaggcaa
atgtttgatccatttgaaagagttgcacgtgctcatcacatttgcccttgctgtgagaga
actttttcagcaaatgaggaagatgaattcgttaaaaagcaaagagtaaaggctacaagt
tctgctgagcatatgaaagtattggctgtggactgttcaaatgctgattttaatttccag
caattagacaagctccgcgtggtctatgaagaatatgtcaaaataggcaaggaatcaatt
cctcttgcagagaagaacttgactcagttaaatgaagagttggaccaaaagaatcaggct
cttgatgatgtgctgggtgttttggctcaaataaaagctgaaaaagattcagttgatgca
ttgataccgcctgtagaaactgctgataggctgttccaggagatacaagctttgcaaaga
caagtaggtgctttggaatgcaaacttgatgttcaagggcaaggtgccaaatcccttgaa
gatattcagtcagagctgaaaatgttggaaaaaaccaagagtacattgattgatgaggcg
gacaagttaagagttgaacaaatgagcttggataaggaattgacaactcttcaattacga
tggaatagtgtaagggaagagaaaattaaggttgccaatgtattatctaacattaaaaga
gcagaggaggagttggatcgtctgtctgaagagaaaagtcaagttcagcttgatttgaag
catctggaagaggctctgggtcctttatcaaaggagaaaaagaaactgctcgatgactac
aacaatctgaaagtcaagcttaatcatgaatatgaattgcaggctgaccattacagggag
taccaacaggaagttgatacactgcttaacatgttttctactatcaaagagtatgataac
ttgaataagggagagaaactgaaagcactacaagaaaagcaagctctgtcagaaactgag
ctgcgaagttgtcagaacagaatgaatgaacttttgactgaactggataagagtagagac
cttagtaggaatcaggcagaattaaggcgcaacatagaggagaacttagaatacaggaaa
ttgaaggctcaagtagaccagctcactcgtgagattgaatcactcgaagaaagtgtgctt
aagattggtggtgtgtccaaaatcgaagcattgcttctaaaactctcacaagaaagagag
agtctgcttacagagttaaacaggtgtcgtggcaccttatctgtatacaagagcaacatc
gataggaatagagttgatcttaagcaggcacaatacaaagacattgacaaaagatatttt
gaccaactgattcaactaaagactactgagatggcaaacaaggatctagacaaatattac
aaagcacttgacaaagcgctcatgcgtttccacacactgaaaatggaagagataaataag
attatacgggaactatggcagcagacttacaggggacaggatattgattatattagcatc
cattcagattctgagggtgctggtactcggtcttatagctataaggtcttaatgcaaact
ggtgatgcagaactagaaatgagaggaagatgtagtgctggtcaaaaggtccttgcatca
cttatcataagattggcgctggctgaaactttttgtctcaattgtggaatactggcactt
gatgaaccaaccacaaacttggatggccctaattcggagagtcttgctgcagctctcctc
agaataatggaggacagaaaaggccaagagaattttcagcttattgtcattactcacgac
gagcggtttgctcaacttattggccaacgccaacatgctgaaaagtattaccgtataact
aaggatgactatcagcacagcatcattgaagcccaggagatctttgattga
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