Sesamum indicum (sesame): 105166873
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Entry
105166873 CDS
T04135
Name
(RefSeq) endoribonuclease Dicer homolog 2 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
sind
Sesamum indicum (sesame)
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sind03036
]
105166873
Chromosome and associated proteins [BR:
sind03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
105166873
microRNA pathway
RISC loading complex
105166873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
DEAD
Helicase_C
Dicer_dimer
ResIII
PAZ
Cas3-like_C_2
SNF2-rel_dom
SWI2_SNF2
AAA_22
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
105166873
NCBI-ProteinID:
XP_011084676
UniProt:
A0A6I9TTT5
LinkDB
All DBs
Position
LG7:complement(9859263..9872188)
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AA seq
1398 aa
AA seq
DB search
MEIGMSTIGGNGQVVADPVPFARSYQLEALEKALKQNTIVFFETGTGKTLIAIMLLRSYA
HLLRKPSPYIAVFLVPTVVLVTQQSEVVATHTDLKVGKYYGEMGVDYWDAATWKDEKEKH
EVLVMTPQILLNALRHRFLRLDHVKVLIFDECHNARGKHPYACIMTEFYHRELASSTLQL
PRVFGMTASPIKAKASSSAAAYWKQIKELETLMNSKVFTCHSDSVLTQCIPFSTPKVKIY
SDMDVPRVTSECLTDDLINLRKKHELSLNTTSISDSVAESAKKRLDKLFSTFIFCLTELG
VWLAMKAAEVYSREEDDIFIWGQMDASGNRVVRAFSSDAVKVFSASIPSGPEWSIRYDLI
DNMKAGYLTSKVMCLVETLLEYREMKDLRCIIFVERIVTAIVICSLLNELLPGFSGWRTE
YTAGNNSRLQSQSRKEQNAIVDEFRKGKVNIIVATSMLEEGLDVQSCNLVIRFDPSATIC
SFIQSRGRARMQNSDFILMVKSGDFSALARVRNYLASGDLMRSECLSHAHLPCDPLDNAM
HDESRYEVESTGAIVTLSSSIALLHFYCSRLPSDGYFKPYPRCTINKELGSCTLHLPNSC
PVQTITVQGEAKFLKQLACLEACRKLHQVGALTDNLVPDILEEEAEVQECGYEPYSDECA
KYLPPELVGSHGNVSETLYNCYAIELRPNFEYDTKLQDIVLAVHTRLDDDLERSNLDLDV
DRGKLIVRIKHVGYVTLNSEQVALCQRFQLTVFRVLIDHNLNKLHEELHEYSNRNGSVFN
YLLLPSIGSYQIDWKCVTAVLYQENASWNLRTDCTNGGYGHYNVRTKNGLVCLCMLENSL
VLTPHNNFLYCITGTLNGIDGNTYLELRDGESFTYKEYYKQRHGINLQFERQSLLNGKRI
FTVHNYLQRCRIPSAKESSNRSVELPPELCLIIMSPISVSTFYSFSFLPSVMHRIESLLI
AANLKRIHMDHCMQNVVIPTLMVLEAITTKKCQEKIHLETLETLGDSFLKYSISQQLFKT
YQNRHEGLLSLKREKIISNAALCKLGCARKIMGFIRNEPFDAKTWIIPGSNCANHILKEE
LLSSTKVYIGGSMKIKSKTVADVIEALIGAFLSAGGEVAALSFMTWLGISVDFVNVPYTR
NVAVNPELHVNVPHLQSLLNYSFRDVSLLVEALTHGSYMLPEIPGCYQRLEFLGDALLDY
LITVHLYHKHPGLSPGLLTDLRSASVNNDCYAQAAVKAELYKHVLHASPELHRHIVHAVC
NHVVVPSASTFGWESETNYPKVLGDIIESLAGAIFVDSGYNMEVVFQCVRPLLEPLVTPE
TLKLHPVRELVELCQSEHYVFKKTTVCNQNGKACATVEVEASGVVYKEMRCEADRKTAKR
LACKAVLKSLKERMPAGQ
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atggagattggtatgtcaactatcggtggaaatgggcaagttgtcgccgatcctgttccc
tttgccagaagttatcaattggaagcactggagaaagcactgaaacagaacacgattgtt
ttcttcgaaactggtactggcaagactctaattgcgatcatgcttctccgcagctatgcc
cacctcctcagaaagccttcaccatatattgctgtttttttggtcccgacagttgtcctg
gtcacccaacaaagtgaagttgtggcgacacacactgacttgaaagtgggcaagtattat
ggtgagatgggtgttgactactgggatgctgccacatggaaggatgagaaggaaaaacat
gaggtgcttgtgatgacgccccaaatcttgcttaatgctttgaggcacaggtttttgaga
ctcgatcatgtcaaggttttaatatttgatgaatgccataatgcaagaggcaagcatcca
tatgcttgcatcatgacggaattctatcatcgtgaactagcttcaagcactctgcagcta
cctagagtatttgggatgacggcttcccctataaaggctaaggcttcaagctcagcagca
gcctactggaaacagatcaaggaacttgaaactcttatgaattcaaaggttttcacatgt
cactcagattctgttttaactcagtgcattccgttttcaaccccaaaagtgaaaatatac
agtgacatggatgttcctcgtgtgacatctgaatgtctcacagatgatttgatcaatttg
cgaaagaagcatgaactttctctcaacacaacgagtatttctgattccgtggccgaatct
gcaaagaaaagattagacaagcttttctctacattcatattctgcttaacagagctgggt
gtttggttagcaatgaaggcagcagaggtctactctcgtgaagaggatgacatctttata
tggggtcagatggatgcatccggaaatagagttgtaagagctttcagttcagatgcagta
aaggtcttctctgcatccattccgtctggtccagagtggtcaattcgttatgatttaata
gataacatgaaggcgggctatcttacatcaaaagtcatgtgtcttgttgagactctgctt
gagtacagagaaatgaaggatttgaggtgcataattttcgttgagaggattgtcacagct
attgttatttgtagtctgctgaatgaattgcttccagggttcagtgggtggaggacggaa
tacacagcagggaacaattccaggttgcagtctcaaagtcggaaagaacaaaatgcaatt
gttgatgaattccgcaagggaaaggttaacatcattgttgcaacctctatgcttgaagag
ggtttagacgtacaaagctgcaaccttgtgattagatttgacccttctgccacgatatgc
agctttattcagtcccggggccgtgctcgtatgcagaactctgattttatactaatggtg
aaaagtggtgatttttctgcccttgctcgcgtgaggaactatttggctagtggagattta
atgcgaagtgagtgcttgagccatgcccatcttccttgtgatccacttgataatgcgatg
catgatgagtcacggtatgaagttgaaagcacaggagcaattgttactttgagttctagc
attgcgctgcttcacttttattgctcacggctgccttctgacggatactttaagccttat
cctcgttgtaccatcaataaggagctgggaagttgtacgctgcaccttccgaatagctgc
ccggttcaaactattacagtccagggcgaagcaaaattcctaaagcaacttgcttgcctt
gaagcttgcaggaaacttcatcaagtcggtgcactgacagataatcttgtacctgatatt
ttggaggaagaagcagaggttcaggaatgtggatatgaaccatattcagatgaatgtgca
aaatatctccctccagaattggttggctcacatggcaatgtatctgaaacactctacaac
tgctatgcaattgagttacgtccgaacttcgaatatgataccaagcttcaagacattgtg
ctggccgttcatacaaggctggatgatgatcttgaaaggtcgaaccttgacttggatgtt
gacaggggaaaactaattgtaaggataaaacatgttggatatgttacccttaactctgag
caggttgccctctgtcagagatttcaattgacagtattcagggttcttattgatcataat
ctaaataaacttcatgaagaactccatgaatattctaacagaaatggttctgtgtttaat
tatcttcttctcccatctattggctcataccaaattgattggaaatgtgttactgctgtt
ctataccaggaaaatgcttcctggaatttgcgtacagattgtacgaatggaggttatggc
cattataatgtgcgcacaaaaaacggtttggtttgcttgtgcatgttagagaattccttg
gtattaacgcctcataacaattttttgtattgcataactggtaccttgaatggtattgat
ggtaatacatatcttgagctcagagatggagaatcttttacttacaaagaatattataaa
cagagacatggcatcaacctgcaatttgaacgccaaagccttctcaacgggaaacgtatc
ttcactgtgcacaactaccttcagagatgcagaattccaagtgcaaaagaatcaagcaat
agatcggttgaattaccacctgagctttgcctgatcatcatgtcgcctatatctgtttct
acattttattctttctcgtttcttccatctgttatgcatcggattgagtcgctgcttata
gctgccaacttgaaacgaattcacatggatcactgcatgcaaaatgttgttattccaacc
ctcatggtcttggaggcaatcacaacaaagaaatgccaagagaaaattcatttggaaact
ttggagactcttggagactcttttctcaagtattccattagtcaacagctcttcaaaaca
tatcaaaatcggcacgagggacttctaagtcttaaaagagaaaaaataatttccaatgct
gcattgtgcaagctgggatgtgcccgcaagattatgggctttatccgcaacgaaccattc
gatgccaaaacatggataatacctgggagcaattgtgcaaatcatatattaaaggaagag
cttctttcatctacaaaagtctacattggggggagcatgaagattaaaagtaagacagtg
gctgacgtgatcgaagcattaattggtgcattcctcagtgctggaggagaagtagcagca
ttgtcctttatgacatggcttggaatcagtgtcgactttgttaatgtaccttatacgcgg
aacgttgctgtgaatccagagttgcatgtcaatgtcccacatttacagtctctattgaac
tattcattccgggatgtttcactcctggttgaggcgctaactcatggttcttatatgctg
ccagaaattccaggatgctatcagcgtttggagtttcttggggatgcattgctggattat
ttaatcacagtgcacctctatcataaacatcctggcctatctcctggacttctaactgat
ctaaggtctgcttctgtgaacaatgactgctatgcccaagcagcagttaaggcggaatta
tacaaacatgtacttcatgcttcaccagagcttcaccggcatatagttcacgcagtctgc
aaccatgtggtggtaccttcagcctcaacttttggttgggaatctgaaacgaactaccca
aaggtacttggcgacatcatagaatccctagctggggcgatctttgttgattcagggtac
aatatggaggttgttttccaatgtgtgcggcctcttcttgagccgttggtcacacctgaa
acactgaagctccatccagttagggaattggttgaattatgtcaaagtgagcattatgtc
ttcaagaaaactacagtttgtaaccaaaatgggaaggcatgtgctactgttgaagttgaa
gcttccggggttgtatacaaagaaatgcgttgtgaagcagatagaaagactgctaaaaga
ctagcctgcaaagctgtcttgaagtctctgaaagaaaggatgcctgcaggacaatga
DBGET
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