Sesamum indicum (sesame): 105167270
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Entry
105167270 CDS
T04135
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105167270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sind03021
]
105167270
03019 Messenger RNA biogenesis [BR:
sind03019
]
105167270
Transcription machinery [BR:
sind03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105167270
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105167270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
105167270
NCBI-ProteinID:
XP_011085214
UniProt:
A0A6I9TJ24
LinkDB
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Position
LG8:complement(320703..327495)
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AA seq
688 aa
AA seq
DB search
MDDGEGGLSFDFEGGLDTGPAHPTASVPVIQSSADAKTASAASGNPNNPSAGLVPAAQTA
EGMGGGARRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVY
KHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTSYNHGNTNKFF
QNRNTTYTQQTEKTQLPQGPNGVNQAGKTNPIESSNINQQAQVQQSQQQGSQGQIQNTPG
GQQNQASRTATPLPQGTSRYFVVKSCNRENLELSVQQGVWATQRSNEAKLNEAFESVENV
ILIFSVNKTRHFQGCAKMTSKIGGSVGGGNWKHAHGTAHYGRNFAVKWLKLCELSFDKTR
HLKNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSDLMAVSLAAELKREEEKAKGV
NLDNGTENPDIVPFEDNEEEEEEESEEEDESPGQVFGAQGRGRGRGMMWLPHMPLARGSR
PFSGIRGFPPNMMSGDGFSYGPVNPDGFPMPDPFGMAPRGFGPYGPRFSGDFAGPAPGMM
FPGRPSGGFGMMMGPGRAPFMGGMGVGAAAAARAGRTVGMAPFYPPPPPSQQSQNSNRAK
RDLKAPFNDKNDGPDQGKGQEISGSSGGHGDEGRNLPRLKAQQEDHYSAGNSYRNDESES
EDEAPRRSRHGEGKKKRRNLEADSTELM
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggatgatggagaagggggtttaagctttgattttgagggtgggctggacacgggcccc
gcacatcccactgcatccgtaccggtaatccaatcgtcagcagacgcgaaaacagcatct
gccgcctccggtaatcctaataacccttccgctggactcgtaccggcagcgcagacggcg
gaagggatgggtggaggtgccaggcggagcttccggcagacggtctgccggcactggttg
cgatctctgtgcatgaaaggggatgcctgtgggttccttcatcagtacgacaagtctagg
atgcctgtttgccgattttttcgcctatacggcgagtgccgcgagcaggactgcgtctac
aaacatacgaatgaggatattaaagaatgcaatatgtataaattgggattttgtccaaat
ggtcctgattgtaggtataggcacgcgaagctgcctggacctccacctcctgtggaagaa
gtccttcagaagattcagcaattgacttcatacaaccatggaaacactaacaaatttttt
caaaaccgtaatactacttacacccagcagacagaaaaaacccagcttccacaagggccc
aatggtgtaaatcaagcaggaaaaaccaacccaatagagagcagtaacattaatcaacaa
gcacaagtacagcagtctcagcagcagggcagccagggtcaaatacagaatactcctggt
ggccagcaaaatcaagctagtaggactgctacacccctgccccaaggaacatctaggtac
tttgtggtgaaaagttgcaaccgcgagaatctggaactgtccgtacaacaaggagtttgg
gcaactcagagaagcaacgaagctaaacttaatgaagcttttgaatctgttgagaatgtc
attttgatcttttcagttaacaagactagacattttcagggttgtgcaaagatgacatcc
aaaattggtggctctgttggtggagggaactggaaacatgctcatggaactgcgcattat
ggacggaattttgctgtaaaatggttaaagctctgtgaattgtccttcgacaaaactcgg
cacttgaagaacccatacaatgagaacttaccagtgaagataagtagagactgtcaagaa
ctggagccttctgtaggggagcagttggcatcattgctctacctcgagccagacagtgat
cttatggctgtctcacttgcagcggaattgaaacgagaagaggagaaggcaaagggagta
aaccttgataatggaactgaaaacccggatattgtaccctttgaagataacgaagaagag
gaagaagaagaaagtgaagaagaggatgaaagtcctggacaggttttcggagctcaaggt
aggggaaggggtagaggaatgatgtggcttccccacatgccgctagcacgtggttctcgg
cccttttctggtatacgaggttttccccctaacatgatgagtggtgatggattttcctat
ggacctgtaaacccagatggttttccgatgcctgatccttttggcatggctccacgtggc
tttggaccatatggtcctagattttctggtgattttgcaggtcctgcccctggcatgatg
ttccctggccggccttctggtggatttgggatgatgatgggtccaggaagggctccgttc
atgggtggaatgggtgtcggtgctgcagctgcagcaagggctggtcgaacagttggtatg
gctcctttctatccaccaccaccaccatcgcaacagtctcaaaattctaatcgagcaaag
agagatctgaaagcaccatttaatgataagaatgatggtccagatcaaggtaagggacaa
gagatctcagggtcctctggtggacatggcgatgaagggcggaatctgccgagactcaaa
gctcaacaagaggatcactatagtgcaggaaacagctacaggaatgatgaaagtgaaagt
gaggatgaggctccaagaaggtctagacatggtgaaggaaagaaaaagcggcgtaacttg
gaggctgattctactgaactcatgtag
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integrated database retrieval system
