Sesamum indicum (sesame): 105167432
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Entry
105167432 CDS
T04135
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105167432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105167432
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105167432
mRNA degradation factors
5'-3' decay
Decapping complex
105167432
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
105167432
NCBI-ProteinID:
XP_011085449
UniProt:
A0A6I9TPT9
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Position
LG8:complement(2059528..2066369)
Genome browser
AA seq
812 aa
AA seq
DB search
MERSDGKDFNDFTDPSSSSASGSALFDASQYAFFGKDIVDEVELGGLGDEEEGLPGGFGG
EEELNEYHLFEKDEGSGLGSLSDIDDLATTFAKLNKVVSGPRHPGVIGDRGSGSFSRESS
SATQWTREADFPDWFDQHISDSEYYEESKRWQSQPHLSSMYLPESKPLYRTSSYPLQQQQ
LPHFSSEPILVPKSSFTSFPPPGSQQASLSNSHHLNLSSLSSGPQSPFSPQNSSPLSNST
LHLPGLPRGFHYNANMSHLTSPNLSRNNQLQNHWISHAGLLHGDQSVLLNNILQHQYQNG
LLPSQLISPQQQRLHLSYQPPLAHFSALQSPMFNSVPSPSHLSKYGLSDKRESKHKSSQK
GKHSVRFSHQGSDAISHRSDSTLPQFRSKYMTAEEIESILKMQHAATHGNDPYVDDYYHQ
ARLAKKSSETRSKYRFCPSHPREQSSRSRNSVESQPHLHVDALGRVCFSSVRRPRPLLEV
DPPPSACGDGSVEQKISEKPLEQEPMLAARVTIEDGLCLVLDVDDIDRLLQFTQPQDGGT
QLRRKRHILLEGLAASLQLVDPLRKSSNSVGLSPKDDIVFLRIVSISKGRKLISRFLQLL
LPGSELARIVCMAIFRHLRFLFGGLPSDPEAAETINYLARTVSLCVSGMDLNALSACLAA
VVCSSEQPPLRPVGSPAGDGASVILKSVLERATHLLRDPQSTSNFSIPNPALWQASFDAF
FGLLTKYCVSKYESIVQSLIVQNPQNAEVVGSEAARAVSREMPVELLRASIPHTDESQKK
LLLNFAQRSMPVTGFNSHGGNSGQANPESVRG
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggagagatccgatggcaaagatttcaatgacttcaccgacccgtccagcagctcagct
tctggtagtgcgctgttcgatgcatcccagtatgcatttttcggaaaagatatagttgat
gaagtggagttagggggtctgggagatgaagaagagggccttcccggtggatttggtggt
gaagaggagttgaatgagtatcatctgttcgagaaagatgagggctcaggattaggatca
ttatctgatatagatgacctggcaactacgtttgcaaagttgaacaaagttgtttctgga
ccaagacatcctggagttattggtgatcgaggatctggatctttctcgagggagagttca
tcagctacacaatggacacgagaggcagattttcctgattggtttgaccagcatatatct
gactctgaatattatgaagaaagtaagagatggcaatcacagccccatctctcttcaatg
tatcttccagaatctaaaccattatacagaacatcatcgtacccgctgcagcagcaacag
ctgccacacttttctagcgagcctatcttagtcccaaagtcatctttcacttcctttcct
ccaccaggttctcagcaagcttctctgagtaattctcatcatcttaatttgtcgtctctt
tctagtggacctcagtcaccattctctccacagaacagctctccattatctaactcaact
cttcatttgcctggtttgcctcgtggatttcattacaatgcaaacatgtcacacctaacc
tcacctaatctctctcgtaacaatcagctacaaaaccactggattagccatgctggtctt
cttcatggggatcagtctgtccttttaaacaatatcttgcagcatcagtatcaaaatggg
ctattaccttcacagctaatatctccacagcagcagagactgcacctttcatatcaaccg
cctttagcccatttttcagcattacagtccccaatgtttaatagtgttccctcaccatca
catttgagtaaatatggattatctgacaagagagagtcgaaacacaaatcatcgcaaaaa
ggcaaacattctgtccggttctctcatcagggatctgatgctattagccacaggagtgac
agtactttgccacaattcagatcaaagtacatgactgctgaagaaatagagagcatactt
aaaatgcagcatgctgcaacccatggcaatgatccttatgtagatgattactaccaccaa
gctcggcttgcaaagaaatcttctgaaacaagatcaaaatatcgtttctgcccatcccac
ccaagggaacaatcttctcgttctcgtaatagtgttgaatcacaaccgcatctccatgtt
gatgctcttggaagggtatgcttttcttcagtgcgtaggcctcgtcctcttcttgaagtt
gaccctcctccctctgcttgtggagatggtagtgttgagcagaaaatatctgaaaagcct
ctggagcaggaaccaatgcttgcagcaagggtaacaattgaggatgggctatgtcttgtt
ctggatgtggatgacattgatcggcttctacagttcactcaaccccaagatggtggaacc
cagcttaggcggaagcgccatattcttttggaaggtttagctgcctctcttcagctggtt
gacccacttaggaaaagtagcaattcggttgggctgtctcccaaagatgatattgtgttt
ctacgaatagtttctatctccaaaggtcggaaactcatttcaaggtttcttcagcttctt
ttaccaggtagtgaacttgctcgaattgtttgcatggccatcttccgccacttaaggttt
ctgtttgggggcctgccttctgatcctgaagcggcagaaaccattaattatcttgccaga
acagtctccttgtgtgttagtggtatggatcttaatgcacttagtgcatgccttgctgct
gttgtttgttcctctgaacagccacctcttcgtccagttggtagccctgctggagatggt
gcctcagtcatcttgaagtctgttctagaaagagcaactcacttattgagagatccacag
tccaccagcaacttcagcatacctaatcctgctctttggcaggcttcatttgatgccttc
tttggtctgctgacaaaatactgtgttagtaaatatgagagtatcgtgcaatcattaatt
gttcaaaacccacaaaatgcagaggtagttggttccgaggctgcaagagctgtaagcagg
gagatgcccgtggagcttctacgtgctagtatcccacatactgatgagagtcagaagaaa
ttgttactgaattttgctcagcggtccatgcctgttactggttttaattctcatggtgga
aatagcggacaagcaaatcctgaatccgtgagaggttag
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