Sesamum indicum (sesame): 105167907
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Entry
105167907 CDS
T04135
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03020
RNA polymerase
sind03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105167907
09124 Replication and repair
03420 Nucleotide excision repair
105167907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sind03021
]
105167907
03400 DNA repair and recombination proteins [BR:
sind03400
]
105167907
Enzymes [BR:
sind01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105167907
Transcription machinery [BR:
sind03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105167907
DNA repair and recombination proteins [BR:
sind03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105167907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
105167907
NCBI-ProteinID:
XP_011086076
UniProt:
A0A6I9TXA4
LinkDB
All DBs
Position
LG8:8099984..8108292
Genome browser
AA seq
1195 aa
AA seq
DB search
MEEDYYEQEYNEEGYEDEDEXTQEDAWAVISAYFDGKGLVRQQLDSFDEFIQNTMQEIVD
ESADIEIRPESQHNPGHQPDFAETIYKISFGQMYLSKPMMTESDGETATLFPKAARLRNL
TYSAPLYVDVTKRVIKKGQDSEEVTETQDFTKVFIGKVPTMLRSSYFTLYQNSEKDLTEL
GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVCKKRQPNKYAFVAEVRSMAETQNKPPS
TMFVRMLSRTSAKGGFIRAYIRATIPYIRTEIPIIILFRALGFVADKDILEHICXNFEDT
QMMELLWPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGE
YCETRKAYYFGYIIHRLLLCALGRKAXDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTGDV
RSYVQKSVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANVAGTRAGVSQVLNRLTYA
STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQAFGLVKNLALMVYITVGS
AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTLRRLRRRVDV
NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRICRESPDDGGW
HDLVSKGFIEYIDTEEEETTMISMTINDLVSARLNPSEAYSDTYTHCEVHPSLILGVCAS
IIPFPDHNQSPRNTYQSAMGKQAMGIYVTXYQFRMDTLAYVLYYPQKPLVTIRAMEHLHF
RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYSDEEKKIRTLVKEDF
GRPDRANTMGMGHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISPDDAQGPAARYTKCD
HSTSLRHSETGIVDQVLLITNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQ
EDMPWTQEGITPDIIVNPHAIPSRMAIGQLIECVMGKVAAHTEKEGDATPFTDVTVDNIS
KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLNHMVDDKIHSRGRGPVQILTR
QPAEGRSRDGGLRFGEMERDCMIAHGATHFLKERLFDQSDAYRIHVCEQCGLIAIANLKK
NSFECRGCKNKTDIIQVHIPYAFKLLFQELMAMAIAPRMLTKDIKKSKEHKKKGA
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagattactacgaacaggagtacaacgaggaggggtacgaggacgaggacgag
nngacgcaggaggatgcatgggcggttatcagtgcttactttgacgggaagggtttggtg
cgtcagcagcttgactctttcgacgagttcattcagaacacgatgcaagaaatcgttgat
gagtccgccgacatcgagattcgtcccgagtcacagcataaccccggtcaccaacctgac
ttcgctgagactatatataagatcagtttcggtcagatgtatctgagtaagccaatgatg
acagaatctgatggagaaactgctactttgtttcctaaggctgcaagactaaggaacttg
acatattcagctccattgtatgtggatgtcaccaagagagttataaagaaaggtcaagac
agtgaggaagttactgagactcaggatttcacaaaagtctttattggaaaggttcctaca
atgttacggtcgagttattttacactgtatcaaaattccgagaaagatttgacagagttg
ggagagtgtccgtatgaccagggtggttatttcattatcaatggcagtgagaaggtttta
attgcacaggagaagatgagcaccaatcatgtctatgtatgtaaaaagaggcaaccaaac
aagtatgcatttgtggctgaagttcggtccatggcggagacccaaaacaagccacctagt
acaatgtttgtccggatgctttctcggactagtgcaaaaggggggttcatcagggcatac
atacgtgccacaatcccatacattcgcactgagattcccatcattattctgtttcgagca
ttgggatttgttgctgacaaagatatattggagcatatctgctagaactttgaagataca
caaatgatggagctgctgtggccctccttggaagaagcatttgtgatccagaatcaacag
gttgctctggactacattggaaaaagaggagctactgttggtgtcacccgagagaaaaga
atcaagtatgccaaagagatactccaaaaagaaatgcttcctcatgttggtgttggggaa
tattgtgagacaagaaaagcctattattttgggtatattatccaccggcttctgttgtgt
gcacttggccgaaaggcataggacgatagagaccactatggcaataaaagactggatctt
gctggtcctttgcttggtggtctgtttcgaatgctattcagaaagttgaccggggatgtg
aggtcttatgttcaaaagtctgtagataatgggaaggatgtaaatttgcaatttgcaata
aaagccaaaacgattaccagtggtttaaaatactcacttgctactggcaactggggccaa
gcaaatgtagcgggtactagagctggagtttcccaggtgttaaatcgcttaacttacgcc
tctaccttgtcacatttgcgaagactcaactcacccataggccgtgaagggaaactcgct
aagcccaggcagttgcacaattcacagtggggaatgatgtgccctgcagaaacacctgaa
ggacaagcatttggattggtgaagaaccttgcattgatggtgtatataacagtcggctca
gcagcatatccaattttagaatttttagaggaatggggtaccgagaactttgaggaaatc
tctcctgctgtgattccacaagcaacaaagatcttcgtgaatggttgttgggttggtatt
caccgcaaccccgatatgttggtgtcaactctgaggcgtctcaggagacgtgttgatgtc
aatactgaggttggtgtggttcgtgatattcgtttgaaggaactccgtatatatactgat
tatggtcgctgcagtcgtccattatttattgtggaaaagcagagacttctaataaagaag
aaggatattcaagctttgcaacaaagaatatgtcgggaatctcctgatgatggtggctgg
catgacctagtctcgaaaggatttatagagtacattgatacagaagaagaagaaacaact
atgatttctatgacaataaatgatcttgtaagtgcaaggctaaatccaagtgaggcttat
tcagatacttatacacactgtgaggttcacccatcattgatactgggtgtttgtgcttca
atcattccctttccagatcacaaccagtctccacgtaacacgtaccagtcagcaatgggt
aaacaagccatgggtatctatgtcaccnactaccaatttcgtatggacaccttggcttat
gtgttgtactatcctcaaaagcctcttgtcactattcgggccatggagcatttgcatttt
aggcagctacctgctggcattaatgccattgttgcaattgcatgctattctggatataat
caagaagattcagtaattatgaatcagtcatcaattgaccgtggtttcttccgttctcta
tttttccgttcttatagtgatgaggagaagaaaatccggacactggtcaaagaggatttt
ggacgcccagatcgagccaacaccatgggcatgggtcatggttcctacgataaattggac
gatgatgggcttgctcctccaggaactagagtttctggtgaggatgtgataattgggaaa
acaactcccatatctcctgatgatgcccaagggccagctgctcgttacacgaaatgtgat
catagcacaagtttacgtcacagtgaaactgggattgtggatcaggtccttctgatcaca
aatgctgatgggttaagatttgtcaaagtcaggatgagatcagttcgcatacctcaaatt
ggagacaaattcagtagtaggcatggtcagaagggaacagtgggtatgacttacacacaa
gaagacatgccatggactcaggaaggcattactcccgacatcattgtaaatccccatgct
attccttctcgtatggctattggccagcttattgagtgtgtcatgggcaaagttgcagca
catacggagaaggaaggagatgctaccccctttactgacgtgaccgtggacaatatcagc
aaagctcttcataaatgtggctatcagatgcgtggttttgagacgatgtacaatggtcat
actggtaggaggcttacagccatgatattccttggccccacttactaccagaggctgaac
cacatggtcgacgacaaaattcactctcgtggtagaggccctgttcagattctcactaga
caacctgcagaaggccggtctcgtgatggtggtctccgatttggtgaaatggaacgagat
tgtatgattgcacatggtgccactcacttcctaaaagaaaggctgtttgaccaaagtgat
gcttacaggatccatgtttgtgagcaatgtggattgatcgcaattgctaacctaaagaag
aattcatttgaatgcagaggatgcaaaaacaaaactgacatcattcaggtccacattcca
tatgcttttaagctgctattccaagagctaatggctatggctatagctccaagaatgcta
acaaaggatattaaaaaatccaaagagcacaagaagaaaggagcttga
DBGET
integrated database retrieval system
