Sesamum indicum (sesame): 105168850
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Entry
105168850 CDS
T04135
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105168850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sind03041
]
105168850
Enzymes [BR:
sind01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105168850
Spliceosome [BR:
sind03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105168850
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
AAA_22
DEAD
AAA_19
AAA_30
PWI
nSTAND3
T2SSE
AAA_16
SRP54
ABC_tran
Motif
Other DBs
NCBI-GeneID:
105168850
NCBI-ProteinID:
XP_011087322
UniProt:
A0A6I9TNY7
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All DBs
Position
LG8:complement(15307032..15332009)
Genome browser
AA seq
1042 aa
AA seq
DB search
MGDLKTWVSDKLMSLLGYSQPTVVQYVITLSKKASSHSEIVNQLVDLGIPSSAETFVFAK
EIFARVEHKTSGPNLYQQQEREAAILARKQKTYKILEADDGSDDMVPVVSLTKKEETRSK
KFRKRSETEDDIDEEVVKKGAQERRVKSRTSHDENDDSESEEERLRDQREREELERHMKE
RDAAGTRKLTDQKLTKKEEEEAIRRSNVLENDGIGTLRKVSRQEYLKKREQKKLEELRDD
IEDEQYLFEGVKLTEAEYRELRYKREIYELVKKRTEESDYTNEYRMPEAYDQEGGVNQEK
RFAVALQRYRDPAAEEKMNPFAEQEAWEEHQIGKATLKFGSKDKKQKHDDYEFVFEDQIE
FIKATVMDGVNVEQELTEAPEVSAAKTAFEKLQNDRKTLPVYPYRDELLQAVNDHQVLVI
VGETGSGKTTQIPQYLHEAGYTARGKIGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSI
RFEDCTSEKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDIAR
FRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRFPVEIHYTKAPEADYLDAAIVTALQ
IHVTQPPGDGDILVFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKI
FEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFVKMKSYNPRTGMESLLVTPISKASA
NQRAGRSGRTGPGKCFRLYTAYNYYNDLDDNTIPEIQRTNLANVVLSLKSLGINDLLNFD
FMDPPPSEALLKALELLYALSALNKHGELTKVGRRMAEFPLDPMLSKMIVASDKYKCSDE
IISIAAMLSIGNSIFYRPKDKQVHADNARLNFHMGNVGDHIALLKVYSSWKETNFSTQWC
YENYIQVRSMKRARDIRDQLEGLLERVEIELISNSNDLDAIKKAITSGFFPNSAKLQKNG
SYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPEWLVEIAPHYYQ
LKDVEDTASKKMPRGEGRASKD
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgggtgatttgaagacatgggtttctgataaattgatgtccctcctgggctactcccag
cctactgttgttcaatatgtgataacactgtctaagaaagcttcatctcactctgagatt
gtaaatcaacttgttgacttgggaatcccatcctctgctgaaacgttcgtgtttgccaaa
gaaatttttgctagagtagagcataagacttctgggccaaatctatatcaacaacaagaa
agggaggcggcaatacttgcacggaaacaaaagacctacaaaattttggaggcagatgat
gggagtgacgacatggttcctgttgtttcattgaccaaaaaggaggaaactagaagcaag
aagttcaggaaaagaagtgaaactgaggatgacatagatgaagaggtagtgaaaaaagga
gcgcaagaaagacgagtaaaaagccggacttcccatgacgaaaatgatgattctgagtca
gaagaagaaagactgcgtgaccagagagaaagggaggagttagagcgtcatatgaaagaa
cgtgatgcagcaggaaccaggaagttgacagatcagaagttaacaaagaaggaagaagaa
gaggcaattcggcgatccaacgttttggagaatgatggcattggcacattaaggaaagtc
tcaaggcaagagtatttgaagaaaagggagcaaaagaagttagaagagcttagagatgat
atcgaagacgagcaatacttattcgaaggtgtgaagctgactgaagcagagtaccgtgag
ctgaggtataagagagaaatatacgaactcgtcaagaagaggacagaagagtctgattat
acaaatgagtataggatgcctgaagcatatgatcaggaaggtggtgtaaatcaagaaaag
agatttgctgtggcattgcagcgttacagggatcctgctgcagaagaaaaaatgaatccc
tttgctgaacaagaggcatgggaggagcatcagattggtaaagcaacactcaagtttgga
tctaaggataaaaagcaaaaacatgatgattatgagtttgtgtttgaagaccaaatagag
tttataaaggcaacagttatggatggtgttaatgttgagcaagagttaacagaagctcca
gaggtgtctgctgccaaaacagcattcgaaaaactccagaatgacagaaagactctgcca
gtctatccttatagggatgagttgcttcaagctgttaatgatcatcaggtccttgtaata
gtgggagagacaggttctggcaaaactacgcagatacctcagtaccttcatgaggcaggg
tacactgcacgaggaaagatcggatgtacccagccacgccgtgttgctgctatgagcgtt
gctgctcgagtttctcaagaaatgggagtaaaacttgggcacgaggttggttattctatt
cgatttgaagactgcacttcagaaaagacagttttaaaatatatgactgatggaatgttg
ttgcgtgaattccttggagaacctgaccttgcaagttacagtgtggtgatggtggatgag
gcccatgaaagaactctctccacggacattctatttggcttggttaaggatattgctcgg
ttccgccctgacctcaaattgcttatttcgagtgccactcttgatgcagagaagtttagt
gattactttgattctgctccaatttttaaaatacctggaaggagatttcctgttgaaata
cattatactaaagccccggaagctgattacttggatgctgctatcgttactgctcttcag
attcatgtgacacagccaccaggagatggtgacattctagtttttttaactggacaggag
gagatcgaaactgctgaggagattcttaagcataggactagagggttagggacaaaaata
gcagaactcatcatatgtcctatttatgcaaacttgccgacagaactgcaggctaaaata
tttgaacccactcctgaaggggcacgcaaagttgtcctggcaacaaatattgccgagaca
tcattgacgatagatgggatcaagtatgtcattgatccgggttttgtcaagatgaagtct
tataaccctcggactggaatggaatcattattggtcactccaatctcaaaagcatcagct
aatcaacgggcaggtcgatctggaagaacaggtcctgggaaatgctttcgcttgtatact
gcttataactactataacgacttagatgataatactattcctgaaatacaaaggaccaat
ttggcaaatgtagtgctttctctcaagagccttggcatcaatgacctgcttaactttgac
ttcatggaccctccaccatctgaagctctgttgaaggccttggaactgctttatgctctg
agtgcacttaacaagcatggcgaattgacaaaagttggtagacggatggctgaattcccg
ctggatcctatgttatccaagatgattgttgcttctgacaaatacaagtgctctgatgag
atcatatctattgctgcaatgctgtctattggaaactcaatcttttatcgtcctaaggac
aagcaagttcatgcagacaatgcccgcttgaattttcacatggggaatgttggagatcat
atagcattgctcaaggtgtatagctcatggaaggaaaccaatttttcaactcagtggtgc
tatgagaattatatccaggtcaggagtatgaaaagagctagagatataagggatcagctg
gaggggctgttggaaagggtcgaaattgagttgatatcgaattcaaatgatctagacgca
ataaagaaagccataacttcagggttttttcccaactcagcaaagctacaaaagaacgga
tcatatagaactgtcaaacatccacagactgttcatattcacccaagctccggtttggca
caggtgcttccgagatgggttgtctaccacgagttggttttaacaactaaggagtacatg
cggcaggtgaccgaactaaaaccagaatggctggtggaaatagctcctcactattaccag
ttgaaggatgtggaagatacggcatcaaagaaaatgcctcgtggtgagggtcgtgcatct
aaggattga
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