KEGG   Sesamum indicum (sesame): 105170088
Entry
105170088         CDS       T04135                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
sind  Sesamum indicum (sesame)
Pathway
sind03020  RNA polymerase
sind03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sind00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    105170088
  09124 Replication and repair
   03420 Nucleotide excision repair
    105170088
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sind03021]
    105170088
   03400 DNA repair and recombination proteins [BR:sind03400]
    105170088
Transcription machinery [BR:sind03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     105170088
DNA repair and recombination proteins [BR:sind03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      105170088
SSDB
Motif
Pfam: RNA_pol_Rpb4 TRF DUF5100 L_PA-C-like DUF7293
Other DBs
NCBI-GeneID: 105170088
NCBI-ProteinID: XP_011088997
UniProt: A0A6I9TRF4
LinkDB
Position
LG9:complement(1096073..1098030)
AA seq 138 aa
MSGEEEENAAELKIPDEFLKAKCLMNCEVALILEHKYEQLQQMADDPMNQMSQVFEKSLQ
YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD
DEAIEKMLNDLSLIKKFE
NT seq 417 nt   +upstreamnt  +downstreamnt
atgtctggagaggaagaggagaacgctgctgagctcaaaatccctgacgaatttttgaag
gctaagtgtctaatgaattgtgaagttgcgctcattcttgaacataagtatgagcagctt
cagcagatggctgatgacccaatgaatcaaatgtctcaggtgtttgagaaatctctccaa
tatgtgaagcgcttcagccgatataagaatcctgatgctgtcagacaagttcgggaaatt
ctgagtagatatcagcttgctgaattcgagctgtgcgtacttgggaacctttgtccggaa
acagtggaggaagctatagccatggttccgtctatcaagacaagaggacgagcacatgat
gacgaggctattgagaaaatgttgaatgacctctccttgatcaagaaatttgagtag

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