Sesamum indicum (sesame): 105170470
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Entry
105170470 CDS
T04135
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105170470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sind03041
]
105170470
03009 Ribosome biogenesis [BR:
sind03009
]
105170470
Enzymes [BR:
sind01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105170470
Spliceosome [BR:
sind03041
]
Complex A
U1 snRNP components
U1 related factors
105170470
Complex B
105170470
Ribosome biogenesis [BR:
sind03009
]
Eukaryotic type
Pre-60S particles
Helicases
105170470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF1067
Motif
Other DBs
NCBI-GeneID:
105170470
NCBI-ProteinID:
XP_011089533
UniProt:
A0A6I9TSG1
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Position
LG9:3545255..3552456
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AA seq
566 aa
AA seq
DB search
MSYVPPHLRSSSAATIAATVGNGVADQFHPKQVKSSSTKFTSAKNNYSTGNSINSGNAGY
RSSGSGVSTRNVVAPDPVFPQWKPSDRVLRLKPEQVQEVRLRLNVDVSVPPDSLHAPAPI
EAFADMNLHTSIMKDIAFHEYTTPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMI
QHCLAQPPIQRGVGPLALVLAPTRELAQQIEKEVKAFSRSLDSFKTAIVVGGTNMAEQRS
ELRAGVHIVVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMQNLPQK
HQTLLFSATMPVEIEELAQEYLTNPVRVKVGKVSSPTANVSQILEKVPENEKIDRLLDIL
VEAAAESERFDRPFPLTIVFVERKSRCDEVAEALTEQGLQAAALHGGRSQSEREAALRDF
RHGPTRILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTD
RDVYLVAQIRKAIQDADSGNTITYAIGKTARRKEKEAIAAQKEAKVELSKLSLVGSTGIN
VEDKYRHMIAPAVIRKEGAADDAWDD
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgttcctccccacctgagaagctcttccgccgccaccatcgcagcaaccgta
ggtaacggtgtcgccgatcagttccatccgaagcaggtgaagagctcttctactaaattc
acttcagctaaaaacaactatagtactggtaactcaattaattccgggaatgcgggttat
cgaagctccggaagtggtgtgtcgacccgaaatgttgtcgcgccggaccctgttttcccc
cagtggaagccgtctgaccgcgttctccgcctcaaaccggaacaggttcaggaggttcga
ttgaggttaaatgttgatgtttcagttccaccagattcacttcatgcacctgcccctatt
gaagcatttgctgacatgaatttgcacacgagcatcatgaaagatattgcatttcatgaa
tataccacgccaacttccatccaggcccaagccatgccagttgctctaagtggaagggac
cttttgggttgtgcagaaactggtagtggcaaaacggctgcatttaccatacctatgata
cagcattgcctagctcagcctccaattcagcgtggagtcggaccattggcattagtattg
gcgccaacgagagagcttgctcagcagatagagaaagaagttaaggccttcagtagatct
ttggactccttcaaaactgcaattgttgtgggtggaaccaacatggctgagcagaggtct
gagctgcgagcaggagtgcatatagtggttgctactcctgggagatttattgaccatcta
caacaaggaaatacttctctgtcaagaatttcatttgttgtcttggatgaggctgatagg
atgcttgacatgggatttgaacctcagataagagaggtgatgcaaaatcttccacagaag
caccaaactctgctgtttagtgctaccatgcctgtagagattgaagagctagcacaggaa
tacttgacaaatccagtgcgggtaaaggttggaaaagttagtagtcccacagctaatgtg
tctcaaatcttggagaaagtaccagagaatgagaagattgacaggcttctcgatatcctt
gttgaggcagctgcagaatctgagagatttgaccgtccttttcccttgaccattgtattt
gtggaacggaagagcagatgtgatgaagttgcagaagccttgacggagcaaggtctgcag
gcagctgctcttcatgggggtcgcagtcaaagtgagcgggaggctgcacttcgtgatttt
aggcatggtcctaccaggatactcgttgccactgatgttgcatcacggggtttagatgtc
accggtgttgctcatgtcattaatctagatcttccaaagacaatggaagactatgtacac
cgaattggacggactggtcgtgcaggatcaacaggccaagctacatccttttatactgat
cgtgatgtgtatcttgtggcgcaaataaggaaagcaattcaagatgcagattctggtaat
accataacatatgcgatcggaaagactgctaggagaaaggagaaggaagctatagctgct
cagaaagaagcaaaagttgaactgtccaagctctcgttggttggatccaccggtataaat
gtggaagacaagtacaggcacatgatcgctcctgcagtaataagaaaagagggtgctgct
gatgatgcttgggatgactga
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