Sesamum indicum (sesame): 105170897
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Entry
105170897 CDS
T04135
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105170897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105170897
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105170897
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105170897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
VBS_C3G9
Motif
Other DBs
NCBI-GeneID:
105170897
NCBI-ProteinID:
XP_011090124
UniProt:
A0A6I9U883
LinkDB
All DBs
Position
LG1:16707568..16731595
Genome browser
AA seq
2414 aa
AA seq
DB search
MIPFSSKISSQVRFLLQSLNDSNSDSVFQELCKCTAHGMEGSILLLQTCLDHLNIYGKDL
KNVKLHPVYSSIFKHILDKPNFSTVFSESLSTVAINEELLQSLSGALQLGVSEKIGIGLA
LSSSENHDIRMCGKNFCMGQIAELCANPVVFESTELIQQILMFLNRSEGLSKHVDSFMQM
LSLVQLKEGAKFILAPFLPDEQREDNFFRHIDLLNEGVEDDFDAILAEMEKEISMADVMS
ELGYGCTVNVSQCKEMLSLFLPLSDATIAKIIGTIARTYSGLDDNQTVFATFRSALGGNS
IMDLPPVDSWDGEVLVDSIKQLSPGINWINVMEKLDHEGFYIPNEAAFSFFMFVYKHACQ
DAFPLHAICGSVWNNIEGQLSFLKHAVSVSPEVFTFAHSERQLSFDDAVIGDTFQQVNYA
WSCRDLLEVLCQISERGHASAVRSLLEYPLTHCPEVLLLGMAHVNTAYNLIQNEVASALI
PMALKNVSGNSLILNLWHVNRSMLLRGLIDAVHLDQDNISRILDVCQELKILSPVLDMIP
FHFGIRLAALASKKEIMDLENWLSTHLVTNKDAFYEECLRFVKDVQIGAQDVSANRFHPP
SPLLNIYLEACPTVLKVLQSHAGVVSSSLLAEEMEKLDVTHMRGNSRIKNGGGSDSTSDS
YADDIEAESNAYFHQMFSGQLSIDAMIQMLTRFKEASDKSVDREQSIFECMIGNLFEEYK
FFSKYPERQLRIAAVLFGSLIKHQLVTHLTLGIALRAVLDALRKPADSKMFSFGTKALEQ
FVDRLIEWPQYCNHILQISHLRAAHADLVAFIERALNRISAAHAEPDIVHNAPSDHHHGP
IQSAVNMEVSGSSFSLIGPGSAQTGLLVSSPIQLPQRPTSSLDDRKTSLSNYMKPAQFSG
GQSAIAPSSDTAGIQKSHSGVGVPSLHSASPGFPRSSRATSARFGSALNIETLVAAAERR
ETPIEAPASEIQDKISFIINNLSAANVEAKAKEFTEILNEQYYPWFAQYMVMKRASIETN
FHDLYLKFLDKVNLKALNKEIVQATYENCKVLLGSELIKSSVEERSLLKNLGSWLGKITI
GKNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCSNSLAYQPPNPWTMGILGLL
AEIYAMPNLKMNLKFEIEVLFKNLGVDLKEVTPTSLLKDRVREVEGNPDFSNKDVGSSQP
PIVNEVKSGIISTLNQVEVPLDVAAPPHAGGHSRIVSQYGAPLHHSSGTLTEDEKLVSLG
FSDQLPSAPGLLQGQTQFSVNQLPVPAANIEQQVVVNKKLQAYGLHLHFQSVLPIAMDRA
VKEIVSSIVQRSVSIATQTTKELVLKDYAMEPDETLIRNAAHLMVARLAGSLAHVTCKEP
LRGSISGQLRSSLQGLSISSELLEQAVQLVTNDNLDLGCVLIEQAATEKAVQTIDGEIAQ
QLSIRRKHRESVGPTFYDASLYAQGQMGVLPEALRPKPGHLSHSQQRVYEDFARFPGQNR
SSQSSNAVPVGPSASSAVGGLSRQFASASGQISPSVYSSGLVNTGLGAVPQTLEISSDEI
DSVGAQIPSVSSTQIAIGDGPQTLESDTIASFPPASTPDLQVMEPSNSVKESGTAAQPIN
SALASERPGSNVLEPLLTTGDALDKYQTISEKLENLLSNDAKEAEIQGVIAEVPAVILRC
ISRDEAALAVAQKVFKGLYENASNSAHVDAHLAILAAIRDVSKLVVKELTSWVIYSEEDR
KFNKDITIGLIRSELLNLAEYNVHMAKLLDAGRNKAATEFVISLIQTLVINDSKVISELH
NLVDALAKLAARPGSPESLQQLVEIAKNPASAATLSPVAVGKEDNTRTSRDKKATVLPGA
SREDYTATELVDSDPAGFHEQVSVLFAEWYQICELPGANDAACARFVLHLQQRGLLKGDE
ISDRFFRRIMELSVSHCVSSEVMNSSPSPSHQGQPLSFLAIDICAKLVFSILKFCPVDQG
SNKLSLLPKVLAVTVKFIQKDAEEKRTSFNPRPFFRLFVNWLLDLCSLDPVFDGANFQVL
TALANSFHAIQPLKVPGFSFAWLELVSHRSFMPKLLTANAQKGWPYFQRLLVDLFQFMEP
FLRNAELGEPVHFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILSAFP
RNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKTKQIKSDVDEYLKTRQQGSSFLAE
LKQKLLLSPTDAARAGTRYNVPLINSLVLYVGMQAIQQLQARAPSHSQSMASMTAFLVSA
ALDIFQTLIMDLDTEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFAESNQEMIQEQITR
VLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRSFTRCAPEIEKLFESVSRSCGGPKPV
DDSVVSGGIPDNMH
NT seq
7245 nt
NT seq
+upstream
nt +downstream
nt
atgattccgttctcctccaagatttccagtcaggttcggtttttgctccaaagcttgaat
gactccaattccgattcggtcttccaagaactctgcaagtgcacggcgcatggaatggag
ggaagcatattactgctgcaaacttgtttggatcacctcaatatttatggcaaggatttg
aagaatgtgaagctgcatcccgtatattcttcaatattcaaacatatcttggataaacct
aattttagtacagtgtttagtgagtcgctgagcactgtagcgataaatgaagaattactg
cagagtctttctggagcattacaattgggggtgtccgaaaaaattggaattggtcttgct
ttgtccagttcagaaaatcatgatattagaatgtgtggaaagaatttctgcatgggtcag
attgctgaattgtgtgccaatcccgtggtttttgagtctactgagctaattcagcaaatt
ctcatgtttcttaatcgatctgaaggcctctccaagcatgtagattcattcatgcaaatg
ttgtctctcgtacaattgaaggagggagccaaatttatcttagctccttttcttcctgat
gaacaacgtgaagataacttcttcaggcacatagatttgttaaacgagggtgttgaagat
gattttgatgccattttagctgaaatggagaaggaaattagcatggctgatgtgatgagt
gaattaggatatgggtgcactgtcaatgtgtctcagtgcaaagaaatgttgtcgctattc
ttgccgctttctgatgccacaatagcgaagataattggtacaattgccagaacttattca
ggccttgatgataaccaaactgtctttgccacattccgctctgctcttggtggtaatagc
attatggatttaccacctgtggattcctgggatggagaggtccttgtagattcaatcaaa
cagctttctcctggaattaactggataaatgtcatggagaagctggatcatgagggtttt
tatatacctaatgaggctgcattttccttttttatgtttgtttataaacatgcatgccag
gatgcatttcctctccatgctatttgtggctctgtatggaacaacatcgagggtcagctg
tcttttctaaaacatgcggtctcagtgtcacctgaagtatttacatttgctcattctgag
aggcaactgtcctttgatgatgctgtgatcggagatacatttcaacaagtaaattatgcc
tggtcatgccgtgacctactggaggtgttgtgccagatatctgagaggggacatgcaagt
gctgtgcgatctctgcttgaatatcctctcactcactgccctgaagttttacttcttggg
atggcccatgtgaatactgcatacaacctcatccagaatgaagtggcttctgctcttatt
cccatggcattaaaaaatgtttctgggaacagtttaatactcaatctgtggcatgtcaat
cgaagcatgttgttgcggggacttatagatgcagtgcatcttgaccaggacaacatttct
aggattttggatgtttgccaggaattaaagattctatctccagtactggatatgattcct
tttcactttggcattcgcttagctgcacttgcttctaagaaagagatcatggaccttgaa
aattggttgagcactcatcttgtgacaaataaagatgctttctatgaggaatgtctcagg
tttgtaaaggatgttcagattggagctcaggatgtttctgctaatcgctttcatcctccc
agtcctcttttgaatatttatttggaagcttgtcccactgtcttaaaggttcttcagtct
catgctggtgttgtttcctccagtctattggccgaggaaatggaaaagttggatgtcact
catatgcgtggtaattcaagaattaaaaatggcgggggttctgactcaacttctgacagt
tatgctgatgacatcgaggcagaatctaatgcgtacttccatcaaatgttttctggtcag
ctgagtatcgatgctatgattcaaatgcttactcgcttcaaggaagcttcagataaaagt
gttgacagggaacagtcaattttcgagtgcatgatcggtaatctattcgaggaatacaaa
tttttctccaagtaccctgaaagacagctgagaattgctgcagttctttttggatcacta
atcaagcatcaacttgtaactcatctcacacttggtattgctttgcgagctgttttagat
gctttgcggaaacctgcggattcaaaaatgttctcttttgggactaaggcactggagcag
tttgtggaccgccttattgagtggccgcagtactgcaatcatatcttgcaaatatctcat
ttgcgtgctgcacatgcagacctggttgcatttattgagagagctcttaacaggatttca
gcggcccatgctgaacctgatattgtccataatgccccttcagatcatcatcatggtcct
atccaatctgctgtgaatatggaggtctcaggctcctccttttctttaattggacctggt
agtgcccagactgggctgctagtttcctctccaattcaacttccacaaaggccgacaagt
tctctagatgataggaaaacctctctgtctaattacatgaagccagcacaattctctgga
gggcagtctgctattgctccttcaagtgatacagctggcatacagaagtcgcacagtgga
gttggtgtgccatcactacactctgcctctcctggttttccacgttcatctcgagctacc
tcagcaaggtttggttccgctttaaatattgaaacgcttgttgctgcagccgagagaaga
gaaactcccatagaggctccagcatcagaaattcaggataagatatcttttattatcaat
aacttgtctgctgctaatgtcgaggctaaagctaaagaatttactgaaatcctgaatgag
caatactatccctggtttgctcagtatatggttatgaaaagggcaagcattgagacgaat
tttcacgatttgtacttgaagttccttgataaagtaaatttgaaggctttgaacaaagag
attgttcaagctacttatgagaactgcaaggttctcttaggatcagaacttataaagtcc
agcgtggaagaacgttcattgctgaaaaacttgggaagctggcttgggaagattacaatt
ggcaaaaatcaagttctaagggcacgggagatagatcccaaatctcttattatagaggcg
tatgagaagggactcatgatagctgttattccttttacctctaagattctcgaaccatgt
tcaaacagtcttgcatatcaaccccctaacccttggaccatgggtattcttggattgctt
gctgagatttatgcaatgcccaatttaaagatgaatctcaaatttgagattgaggtcctg
ttcaagaaccttggtgttgaccttaaggaagtaacaccaacttctcttctgaaggacaga
gttcgggaggttgaaggtaaccctgatttttcgaataaagacgttggatcttcacagcca
ccaatagtgaatgaggtaaagtctggaataatatccacactaaaccaagttgaggtaccc
cttgatgttgccgctcctccacatgctggtggccattcacgaatagtatctcagtatggt
gcgcctcttcatcattcatctggaactttgacggaggatgagaagttggtaagcttggga
ttttctgatcaacttccttctgcaccaggccttctacaggggcagacgcagttttcagtt
aatcagcttcctgtgccagcggccaatattgaacaacaagttgttgtcaacaaaaagctt
caggcttatggactgcacttgcatttccagagtgtactgccgatcgccatggatagagct
gttaaagagatagtgtccagtattgtgcaacgaagtgtttctatagctactcagacaact
aaggaacttgttttgaaggattatgccatggaaccagatgagacccttatacggaatgca
gcacatttgatggttgcaaggttggcagggagtctagctcatgtaacctgcaaggaacct
ttacgaggttcaatatcaggccagcttaggagttcacttcagggcttgagtatatctagt
gaacttctcgaacaagctgttcaacttgtgactaatgacaatctggaccttggttgcgtg
ttgattgaacaagctgcaacagagaaggcagttcaaaccattgatggagaaattgcacaa
caactttctatcaggagaaagcatagagaaagtgtcggtcccacattttatgatgccagc
ctgtatgcacaaggtcaaatgggtgtccttccggaggctcttcgtcccaaacctggtcac
ctgtcacattcccaacagcgagtttatgaggattttgctcggtttccagggcagaaccgc
tccagccaaagctcaaatgctgtgcctgttggcccttccgcttcatctgccgttggtggt
ttgtctcggcaatttgcatctgcatctggccaaataagcccaagcgtctactcatctggc
cttgtaaacactggacttggtgctgttccccagactttggagattagttctgacgagata
gactctgttggagcccagattcctagtgtgtcctcaacacaaattgcaataggcgatggt
ccacagactcttgaaagtgataccattgcttcatttcctcctgcttcaactcctgatcta
caagtgatggagccttctaactctgtaaaagaatctggaactgctgcacagcctattaat
tcagctttggcttctgagcgtcctggaagcaatgtcttggagcctttgctcacaacaggc
gatgcgctggataagtaccaaactatttcagagaagctcgaaaatctattgagtaatgat
gctaaggaggctgaaattcagggagttattgctgaggtccctgcagtcatcctcaggtgt
attagcagagatgaggctgctttggctgtggctcaaaaggtcttcaagggcttgtatgaa
aatgcatcaaacagcgcccatgttgatgcccatcttgcaatcctggctgccatccgtgat
gtcagcaagcttgtagttaaggagctcactagttgggtgatatactctgaggaggatagg
aaatttaataaagatattactattggtcttatccgaagtgaattattaaaccttgcggag
tataatgttcatatggcaaagcttcttgacgcaggaagaaacaaggctgcaacggagttt
gtcatttcacttatccaaacattggtcatcaacgattctaaagtgatatcagaactacat
aatctcgttgatgctctggcgaagctcgctgcgagacctggatctccagaatcattacaa
cagctggttgaaattgccaagaatcctgctagtgctgcaactttgtctcctgtagctgtt
gggaaagaggataatacgagaacctccagagacaaaaaggctaccgtgcttcctggagca
agcagggaagactacactgccacggagttggtggattccgatcctgctggttttcatgag
caggtttctgtgctatttgctgaatggtaccaaatatgtgaactccctggagcaaatgat
gctgcttgcgctcgttttgtcttgcacttgcaacaaagaggcctgcttaaaggggatgaa
atatcggatcggttttttcgcaggatcatggaactttctgtgtcacattgtgtttcttct
gaggtgatgaattctagcccgtccccatcacatcaagggcagccactatcattccttgct
attgatatctgcgcgaagttggtcttctcaattctgaagttttgccccgtagatcaggga
tccaataaactctctcttcttcccaaggttcttgctgtaacagtgaagtttattcaaaag
gatgcagaggaaaaaaggacatcctttaaccccaggccattttttaggctgtttgttaat
tggctgcttgatttgtgttccttggatcctgtattcgatggtgcaaattttcaggtgttg
actgctctagcaaattccttccatgctattcagcctctcaaagttccaggattcagcttt
gcctggctagagttggttagtcatcgaagtttcatgccaaaattactcacagcaaatgca
cagaagggctggccctatttccaaagattgcttgtagacttgttccagttcatggagcca
ttcctgaggaatgcagaacttggcgagccggttcattttctctataaaggaacgctcagg
gtgttgttggtgctgctccatgattttccagagttcctttgtgattatcatttcagtttt
tgtgatgtcattcctccaagttgcatacagatgcgaaatataatccttagtgcatttcct
cgcaatatgaggctaccagatccttctactcccaacttgaagattgatctgctggcagaa
attagtcaatcaccaagaatcctatctgaggttgatgcagcgcttaaaacaaagcagatc
aagagtgatgtggacgagtatctcaagacaaggcaacaggggtcctcttttcttgctgag
ttgaagcaaaagcttctgctttctccaactgatgcagctcgtgctgggactcgttacaat
gttcctctcattaactcccttgtgctttatgttgggatgcaggccattcagcagctacaa
gcaagggccccatctcattcacaatccatggctagtatgactgcatttttggtgagcgct
gctttagacatttttcagacattgataatggatctggacacagagggtcgctacctattc
ttgaatgctgttgccaaccaattacgttatccaaacaaccacacgcattacttctctttc
attcttctctacctgtttgctgagtcaaaccaggaaatgatccaggagcaaatcacccga
gtcctattggaacgcctgattgttaataggcctcatccttggggacttctgatcacattt
attgagctaatcaagaatcctaggtacaacttctggagtcggagtttcactaggtgtgca
ccggagattgagaagctatttgaatcagtctcaaggtcttgtggtggcccgaaacctgtg
gacgacagtgtagtatctggtggaataccagacaatatgcattaa
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integrated database retrieval system
