Sesamum indicum (sesame): 105172144
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Entry
105172144 CDS
T04135
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105172144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105172144
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
105172144
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
105172144
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
105172144
NCBI-ProteinID:
XP_011091789
UniProt:
A0A6I9TX41
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Position
LG10:complement(6477779..6483161)
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AA seq
291 aa
AA seq
DB search
MVGLSLGEQNFIKGGIAQDLRTDGRKRLAYRPIFVETGVIPQASGSARVKLGATDVIASV
KAELGKPNPSHPDKGKVSIYVDCSPTAEPTFEGRGGEELSTELSSALQRCLLGGKSGAGA
GIDLSSLSIVEGKVCWDLYIDGLVVSSDGNVLDALGAAIKAALSNTVIPKVQVAANASSD
EQPEVDVSDEEFLQFDTSAVPVIITLTKIGKHYIVDATTEEESQMSSAVSVSINRQGRIC
GLTKRGGAGLDPSIILDMISVAKHVSEQLINKLDSEIAAAEACEEETEMDS
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggtggggctttcccttggagagcaaaacttcataaagggtggaattgctcaggatctg
cgaaccgatggtcgaaaacgattagcttaccggcccatctttgtggaaactggcgtcatt
cctcaggcaagtggctcagcaagagtgaagcttggggcaacagatgttattgcaagtgtg
aaggctgagcttggaaagccaaatccgtctcatcctgacaaaggaaaggtttcaatatat
gttgattgcagcccgacagctgaaccaacttttgagggcagagggggtgaggaattatca
acagagctctcttcagcacttcaacgatgtttattaggtggtaaaagtggcgcaggagct
gggattgatctctcgtcactatccattgttgaggggaaggtctgttgggatctttacata
gatggtcttgtggttagttcagatggaaatgtattggatgccttaggagctgccattaag
gcagctctaagcaatacagttattccaaaggtccaagtagcagccaatgcctcttctgac
gagcaaccagaggttgatgtgagtgatgaagaatttcttcaattcgacacctcagcagtc
cctgttataattactttgaccaagatcgggaagcattatattgtagatgcaactaccgaa
gaggagtcacaaatgagttcagctgtttccgtttctattaataggcaagggcggatatgc
ggactaacaaaaagagggggtgcaggtttagatccaagtatcatacttgacatgatatca
gttgctaaacatgtaagtgagcagttgataaacaagttggattcagaaattgctgcagct
gaggcttgtgaagaggaaactgagatggacagttag
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