Sesamum indicum (sesame): 105172288
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Entry
105172288 CDS
T04135
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105172288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105172288
03012 Translation factors [BR:
sind03012
]
105172288
Enzymes [BR:
sind01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105172288
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105172288
Translation factors [BR:
sind03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105172288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
ATPase
AAA_16
AAA_19
T2SSE
PhoH
ABC_tran
AAA_23
Myosin_head
Motif
Other DBs
NCBI-GeneID:
105172288
NCBI-ProteinID:
XP_011091970
UniProt:
A0A6I9TXG1
LinkDB
All DBs
Position
LG10:9953009..9971485
Genome browser
AA seq
1158 aa
AA seq
DB search
MHSRLRVFLARAARKSAGLSSPSFSPNPRVLSNGEYTGFANVAVSSRRLQSQILTYYSVV
VRRGFSGYAVEQFSDDEYECDYENHPVSSSVANIDEWKWKLSMLVRSDKDQEIVSKDKRD
RRDFEQISSLAKRMGLYCEIYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEG
LLQEHLDRRIVNSDEVGDTSDKMKVNQLENVEPAEHSDSFLDGSVMERVLQRRSLRMRNM
QRAWQESPEGRRMLDFRKSLPAFMEKERLLQAIARNQVVVISGETGCGKTTQLPQYILES
EIESGRGAFCSIICTQPRRISAMAVAERVSAERGEPLGESVGFKVRLEGMKSKNTHLLFC
TSGILLRRLLSDRNLDGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLN
ADLFSSYFGEAPMIHIPGFTYPVRAHFLEDILEMTGYKLTSFNQVDDYGQEKMWKTQRQL
APRKRKNQITNLVEEALSKSNFENYSSRVHESLSCWTPDCVGFNLIEAVLCHICRKERPG
AVLVFMTGWEDISCLRDQIKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKPPPNVRKII
LATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQP
GECYHLYPRCVFEAFAEYQLPELLRTPLNSLCLQIKSLEVESIGDFLSAALQPPEPLAVQ
NAVDFLKMIDALDENENLTHLGKFLTVLPVDPKLGKMLIMGAIMRCFDPILTIVSGLSVR
DPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDADREGSAYEYCWRNFLSVQT
LQAIHSLRKQFTYILKDAGLLDTDGATSNRLSHNQSLVRAVICSGLFPGIASVVHRETSM
SFKTMDDGQVLLYANSVNARYQTIQYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGKL
YHGVTPGNLKMLEGYIDFFMDPSLAECYVTLKEELDKLIQKKLQDPDLDIDKDGKYLMHA
VQELVSGDQCEGRFVFGRESKRPRESCDKDRFTKDGTNPKSLLQTLLMRAGHSPPKYKTK
HLKTNEFRALVEFKGMQFVGKPKKNKALAEKDAAIEALAWLTHTSDNNHNEDHNSPPDVT
DNMLKLLGRRRRSKRHSH
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgcattctcggctgagagtttttcttgcacgagccgccagaaaatctgcgggtctttct
tccccttcattttcgccgaatccaagagttctatcaaatggagagtatactggttttgcc
aatgttgctgtaagttctcgtcggctccagtcgcagattttgacttattactctgttgta
gttcgacgtggcttctctggctacgctgtcgagcagttctccgacgatgaatatgaatgc
gactacgaaaaccatccggtctcatcatcagtggcgaatattgatgaatggaaatggaaa
cttagcatgttggtacgaagtgataaggatcaagaaatagtgtccaaagataaaagggac
cggagggacttcgaacaaatatctagccttgccaaacgaatggggctttactgtgaaata
tacgggaaagtggtagttgccagcaaggttcctcttcccaactacaggccagatctggat
gataagaggcctcaaagggaggttgtcatccccttgagcttgcaaagaagggtggaaggt
ttgctccaagaacatcttgacagaagaattgtgaactctgatgaagtgggtgacacttca
gataaaatgaaggtcaatcagcttgaaaatgtcgaacctgctgaacattcagattctttc
cttgatggttctgttatggagagagttctacagcggcgcagcttgcgcatgcgaaatatg
cagagagcttggcaggaatcacctgaaggtaggagaatgctggacttcaggaagtctctc
cctgcgttcatggagaaggaaaggctccttcaagcaattgcgaggaatcaggttgtggtg
atttctggggagactggatgtggtaaaaccactcaacttcctcaatatattttggagtct
gaaatagagtccggtcggggagcattttgtagcattatctgtacacaacctcgaagaata
tcagccatggctgttgcagaaagagtttctgctgagaggggagagcctcttggggaatca
gttggatttaaagtaagattggagggaatgaaaagcaagaacacacatttgctcttttgt
accagtggaattctgctccgtaggctcttgagtgatagaaaccttgatggcgtaactcat
gtttttgttgatgaaattcatgagcgaggcatgaatgaagacttcttgttgattgtcttg
aaggatcttcttccacggcggcgcgatttgagattgatcttgatgagtgcaactctgaat
gctgatctattttcgagttattttggtgaagcaccaatgattcacattcctggtttcacc
tatcctgtaagagctcattttctggaagatatactggaaatgactgggtataagctgact
tcattcaaccaagtagacgattatggccaagagaagatgtggaagactcaaagacaacta
gctccaaggaaaaggaaaaatcaaatcactaatcttgttgaggaagcgctgagtaaatca
aattttgagaattatagctccagggtacacgagtccttgtcgtgctggacaccagattgt
gttggatttaaccttattgaagctgtactgtgtcacatatgtcgcaaggagcgccctggt
gctgtgttagtatttatgacagggtgggaggatattagctgtttgagggatcaaataaaa
gctcaccctctcttaggagaccccaatagagtccttttgcttacatgccatggttcaatg
gcaacctccgaacagaaactcatatttgagaagccacctcctaatgttcgcaaaataata
ctagccacaaatatggccgaggcaagtattacaattaatgacatagtttttgttgttgac
tgtggaaaagcgaaggagaccacttatgatgcccttaataacacaccatgtttgttgcct
tcatggatctcccaagcttctgctcggcaaagaaggggcagggctggtcgtgtgcagcca
ggcgagtgctaccacctatatccacgatgtgtttttgaagcttttgctgaatatcaactt
cctgaacttttaagaacccccttgaactctctctgcttgcaaattaaaagtttagaagtt
gaaagtattggagattttctgtctgctgctcttcagccgcctgaaccattggctgtgcaa
aatgctgttgattttttgaagatgattgatgcattagatgaaaatgagaacctaacacat
cttggtaagttcttgacagtgcttccagttgatcctaagctggggaaaatgctaattatg
ggtgctattatgcgctgctttgaccctattttgactattgtatctggcctcagtgttagg
gatccttttcttttgcctcaagataagaaggatttagctgggaccgccaagtccagattc
tcagcaaaggactatagtgatcatatggctcttgttcgcgcatatgaaggatggaaggat
gcagacagagaaggatctgcatacgagtattgctggagaaacttcctctctgtccaaaca
cttcaagctatccattcccttcgtaagcagtttacctacattttgaaagatgctgggttg
ctagacacagatggagcaactagtaacagattaagtcacaaccaatcgttggttcgtgct
gttatttgttctggcctatttcctggtattgcatctgtagtgcacagagaaacgtcaatg
tctttcaaaacaatggatgatgggcaggtgttactctatgcgaattctgtgaatgcacgt
taccaaacaatacaatacccatggttggtgtttggtgagaaggtgaaagtcaatactgta
ttcatacgtgattcaactggagtatctgattccattttgatcctgtttggtggtaaactt
taccatggtgttacgccaggaaatcttaaaatgttggaaggatatatcgacttcttcatg
gatccaagtttagcagagtgttatgtgacgctaaaggaggagcttgataagcttatacag
aagaagcttcaagatcccgacctggacatcgacaaggacggcaagtatctgatgcatgct
gtacaggagttggtatcgggtgatcaatgtgaagggaggtttgtttttggtcgtgaaagc
aagagaccaagagagtcctgtgataaagataggtttaccaaagatggaacaaatcccaag
agtttgctgcagacactgttgatgagagctggtcactcacctcccaaatataaaacaaaa
catcttaagacaaatgaattcagagcattggtggaattcaaagggatgcagtttgtgggg
aaaccaaagaaaaataaggccctagcagagaaagatgcagctatagaagcgttagcatgg
ttaactcacacatctgataataatcataacgaagatcataattctccaccagatgtcacg
gacaacatgctgaaacttcttggcaggcggaggagatcaaaacggcattcacattaa
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integrated database retrieval system
