Sesamum indicum (sesame): 105172298
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Entry
105172298 CDS
T04135
Name
(RefSeq) uncharacterized protein LOC105172298
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105172298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sind03021
]
105172298
03019 Messenger RNA biogenesis [BR:
sind03019
]
105172298
Transcription machinery [BR:
sind03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105172298
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105172298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
105172298
NCBI-ProteinID:
XP_011091989
UniProt:
A0A6I9UCW1
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All DBs
Position
LG10:complement(10475244..10481816)
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AA seq
559 aa
AA seq
DB search
MLPHFNSHLRNPNNQLHVNAANASAPPQVMGNPGNFGPNPIQVRPQFQVGMLNNPPLVMP
AFTNPNTYFSPAQFFPYPQGSVQNLSNNSLPQFFTHNSVNPPQFLPIGQLNVPSLVKNVN
QLLQMQMPNCGPQSSGLFANALLGVSNGNGVMQQSVDGTGLKHINHNAAVTKDFGCAQAQ
RNENVFSPGSAKSQNNAGAATGMNDRNSSFRKSHNKNFIGNHKQDTSQRGFNKRQFNQRQ
NAHGNRNLKFNNENRAKGNKNNEVKNFNFSNSFEQIQAGKRRSLVVNYTEEEIQQWREAR
RKNYPSNANMERLKQNPTQTDVTHTVSKMRRQQLKEVLAKQAELGCEVAEIPSCYLSDSE
TQKGCRQQATKVFGKRGRFPNKFDKKGKFHQSDWFSKRQKPEKDGSANSQEQSDQFTKKQ
KLANCCATKPCTSNKEPSLLKKLLNSDIKRDKKHLLQVFRFMVMNSFFEDWPEKPLKFPL
VVVKESGDVSELVEEPQAARGDTPDGLVSTTAENSWVCTVNFKNSSHGGVDALDKNAASC
SRIYAEAEDEDEDEGVKPQ
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctcacttcaattctcatcttcgtaaccctaataatcaactccatgtcaatgca
gccaacgcttcagcaccacctcaggttatggggaacccaggtaattttggccctaatcct
attcaagttcggcctcagtttcaagtgggaatgctcaataatcctccgctagtgatgcca
gcttttactaacccaaacacctatttttctccggcccagtttttcccctatcctcaaggc
tctgtgcagaacctcagtaataacagtctgcctcagtttttcacccataattctgtaaat
ccgccacagttcttgcctattgggcaattgaatgtgccaagtttagtgaaaaatgttaac
cagcttttgcaaatgcaaatgccgaattgtggccctcaaagttcgggtctttttgcgaat
gcgctgttgggtgtgtcaaatggcaatggggttatgcaacagtcagtagatgggactggt
ttaaagcatataaatcataatgctgctgtaactaaggattttggttgcgctcaagctcaa
agaaatgagaatgtcttttctcctggttctgcgaaatcacagaataatgcaggagccgct
actggaatgaatgacagaaatagtagctttagaaaatctcataacaagaactttataggg
aatcataaacaagacacatcacagagaggatttaataagaggcagttcaatcaacgacaa
aatgcacatgggaacaggaacttgaagtttaataatgaaaaccgtgcaaaagggaacaaa
aataatgaagtgaagaactttaacttttctaactcctttgagcaaattcaagctggaaaa
agaaggtctcttgtagtaaactacacagaagaagaaattcaacagtggcgtgaagcacgg
aggaaaaattacccatcaaatgccaacatggagaggttgaaacagaatccaacacaaaca
gatgtcactcatacagtctcaaagatgcggcgacagcaactcaaggaggtattggcaaaa
caagctgaattgggttgtgaagttgcagaaataccatcttgttacttatcagattctgag
acacagaaaggttgtaggcaacaagctactaaggtatttggtaagagaggaagatttcct
aataagtttgataagaagggcaagttccatcaaagtgattggttctctaagagacaaaag
cccgaaaaagatggttcggcaaactcgcaggagcaaagtgatcagttcactaagaagcag
aaattggctaattgctgcgccactaagccgtgtacatctaataaagagccatctctcttg
aagaaactgttaaattctgatatcaaacgagataagaagcatctgctgcaggtttttagg
ttcatggtgatgaattcattcttcgaagattggcctgagaaacctctgaaatttcctcta
gttgttgtcaaagaatcaggtgacgtaagtgagcttgtagaagaacctcaggcagccaga
ggtgatactcccgatggtcttgtctcaaccaccgcagaaaactcttgggtttgtactgta
aactttaagaatagcagccatggtggagttgatgctctagataaaaacgctgctagttgt
agcagaatatatgctgaagctgaagatgaagatgaagatgaaggtgtaaaaccgcaataa
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