Sesamum indicum (sesame): 105172407
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Entry
105172407 CDS
T04135
Name
(RefSeq) pre-mRNA-splicing factor 38-like
KO
K12849
pre-mRNA-splicing factor 38A
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105172407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sind03041
]
105172407
Spliceosome [BR:
sind03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105172407
Complex C
U4/U6.U5 tri-SnRNP related factors
105172407
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
HIND
Motif
Other DBs
NCBI-GeneID:
105172407
NCBI-ProteinID:
XP_020553171
UniProt:
A0A8M8VAK9
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Position
LG10:12831480..12836656
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AA seq
388 aa
AA seq
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MANRTDPLAKSIRGTNPQNLVEKILRTKIYQNTYWKEQCFGLTAETLVDKAMEIDHLGGT
HGGNRKPTPFMCLIMKMLQIQPDKEIVVEFIKNPEYKYVRALGAFYLRLTGTDVDVYRYL
EPLYNDYRKLRLKLNDGKFTLTHVDEFINELLTTDYSCDIALPRIRKRLTLEAIDSLEPR
RSALEDDFEEEEEKDEDEQLADGLDSGGHEVHDKDYYGARSPTRERGRDRRRDNHRYRDR
DYDRERDYDKVYDRDRGRGRDRDGERDRDRHRPRDEKDYGRERDREREREREGRERERRD
RERGRRRSHSRSRSRSRDRKDRDGDDRRKRPRSSASPKRRGGRPEDARAEPRKKKEKANK
DDGTDHPDPEIAEQNRLRASLGLKPLKL
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcggacggaccctctggcgaagagcataaggggtacgaaccctcagaacttg
gtggagaagattctgcgcaccaagatataccaaaacacctactggaaggagcagtgcttc
ggcctcaccgccgagacgctcgtcgacaaggccatggagatcgaccaccttggcggcacg
cacggcggcaaccgcaagcccactccttttatgtgcctcatcatgaagatgcttcagatt
cagccagacaaggaaatcgttgtcgaattcataaaaaatcctgagtacaaatatgttcgt
gcacttggagccttctatttgcgactcacagggacagatgttgatgtttatcgttacctg
gaacctttgtacaatgattaccggaagttgaggctcaagctaaatgatggaaagttcaca
ttgactcatgttgacgagtttatcaatgagcttctgacaacagattactcttgtgatatt
gctctgcctcgaatcagaaaaaggttgacccttgaagccattgattcactagaacctcgg
agaagtgctcttgaagatgattttgaagaggaagaagagaaggacgaagatgagcaactt
gcagatggattagattctggcggccatgaggtccatgacaaggattactatggggcacga
agtccaactagggaaagaggtcgtgataggagacgagataatcatagatacagggatcga
gattatgaccgagagcgtgattatgacaaagtttatgatagagatcgtggaagaggacgt
gatagagatggagaaagagacagagataggcatcgcccaagagatgaaaaggattatggt
cgtgaaagagacagggagagggagagggaaagggaaggcagggaacgagaaaggcgagat
agggagcgtgggaggaggagaagccattcaaggagccgaagtagaagtagagatcgcaag
gaccgtgatggtgatgaccgtcgcaaaaggcctcgtagcagtgctagtcctaaaaggcgt
ggggggaggcctgaggatgctcgggctgagccaagaaagaagaaagagaaggcaaataaa
gatgatggaacagatcatccggatcctgagattgcagaacaaaataggctcagggcatca
cttggactgaagcctctcaaattgtga
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