Sesamum indicum (sesame): 105173196
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Entry
105173196 CDS
T04135
Name
(RefSeq) serine/arginine-rich splicing factor RS40
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105173196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sind03041
]
105173196
Spliceosome [BR:
sind03041
]
Common components
Common spliceosomal components
SR proteins
105173196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RNA_bind
RRM_5
DUF2129
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
105173196
NCBI-ProteinID:
XP_011093178
UniProt:
A0A6I9TZY1
LinkDB
All DBs
Position
LG11:complement(1539573..1542261)
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AA seq
310 aa
AA seq
DB search
MRPVFCGDLDFDCRDSDVERLFRRYGRVDRVDMKSGFAFVYMEDEHDAEVAIQKLDGIHF
GRKGCKIRVEWTKRERGGRRDDISKRSSTNSRPSKTLFVINFDPINTRNRDIERYFEHYG
RILSVRIRRNFAFVQYELQEDATRALEASHRSNFMDRVISVEYANRDDDGYNPDGRVRDV
SPGRRNYDRGHSPIPYRRDRGSPDYGRETLPSSRFEQRDRDRHSPDYGREALSNSTSQQR
GKGSPDYGREVIPNSRTQQRERGSPDFGRETVPNSRSEQSNNLHYGTAESPLNTRYNIHS
PPRERSRSRS
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgaggcctgtgttctgcggggatctcgattttgattgtcgcgattctgatgttgaacgt
cttttcagaagatatgggagggttgacagggtggacatgaaatctggcttcgcttttgtt
tacatggaagatgagcatgatgcagaggttgcaatccagaaactcgacgggatacacttt
ggtagaaagggatgcaaaattcgtgttgagtggactaagcgagaacgtggtggccgaagg
gatgatatctcgaaaagatcttcaaccaactcacggccttcaaagactttgtttgtgatc
aacttcgaccccatcaatactaggaacagagacatcgaaaggtactttgaacattatgga
agaatattaagcgtcaggatcagaaggaattttgcatttgtgcaatatgagttgcaggag
gatgctacccgagcattagaagcaagccacaggagtaatttcatggatcgagttatttca
gtggagtatgcaaatcgagatgatgatgggtataaccctgatggaagagttcgagatgtg
tcccccggtagaaggaattatgatcgtggacattctccaattccataccgaagggatagg
ggtagccctgattatggacgtgaaactttaccaagctctagatttgagcaaagggatagg
gataggcatagccctgattatggacgtgaagcattatcaaattctacatctcagcaaagg
gggaagggtagccctgattatggacgtgaagtcataccaaattccagaactcagcaaagg
gaaaggggtagccctgattttggacgtgaaactgtacccaattctagatctgaacaaagc
aacaaccttcattatggaacagcagaaagccctttgaacaccagatataatatccattcg
cctccacgtgaaagatctcgatctcgatcttga
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